WormBase Tree Display for Gene: WBGene00012692
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WBGene00012692 | SMap | S_parent | Sequence | Y39B6A | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Allele (91) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation (12) | ||||||
Contained_in_operon | CEOP5480 | |||||
Ortholog (34) | ||||||
Structured_description | Concise_description | Y39B6A.33 encodes the C. elegans ortholog of mammalian GLTSCR2/PICT1 (GLioma Tumor Suppressor Candidate Region gene 2/Protein Interacting with the C Terminus-1); loss of Y39B6A.33 activity via RNAi results in lower oxygen consumption rates, suggesting that Y39B6A.33 plays a role in positively regulating mitochondrial respiration rates; in body wall muscle cells, Y39B6A.33 localizes to the nucleolus. | Paper_evidence | WBPaper00044885 | ||
WBPaper00038444 | ||||||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 03 Apr 2014 00:00:00 | |||||
Automated_description | Predicted to enable 5S rRNA binding activity. Involved in positive regulation of cellular respiration. Located in nucleolus. Is an ortholog of human NOP53 (NOP53 ribosome biogenesis factor). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | Y39B6A.33 | ||||
Corresponding_transcript | Y39B6A.33.1 | |||||
Other_sequence (34) | ||||||
Associated_feature | WBsf662209 | |||||
WBsf1003082 | ||||||
WBsf1021608 | ||||||
WBsf1021609 | ||||||
WBsf233181 | ||||||
WBsf233182 | ||||||
Experimental_info | RNAi_result | WBRNAi00071609 | Inferred_automatically | RNAi_primary | ||
WBRNAi00106734 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00009313 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00036923 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00113964 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00056190 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00026664 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00071837 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00094100 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00106938 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr9472 | |||||
Expr1025039 | ||||||
Expr1035610 | ||||||
Expr1159689 | ||||||
Expr2007369 | ||||||
Expr2025604 | ||||||
Construct_product | WBCnstr00014037 | |||||
Microarray_results (20) | ||||||
Expression_cluster (114) | ||||||
SAGE_tag | SAGE:tcacacttcc | Strand | Sense | |||
Unambiguously_mapped | ||||||
SAGE:ctcctgtgtg | Strand | Antisense | ||||
SAGE:ataaaaaataacgaatt | Strand | Antisense | ||||
SAGE:ataaaaaata | Strand | Antisense | ||||
SAGE:aaaaactgtttttctga | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:aaaaactgtt | Strand | Sense | ||||
Unambiguously_mapped | ||||||
SAGE:tcacacttccaaaacca | Strand | Sense | ||||
Unambiguously_mapped | ||||||
Interaction (177) | ||||||
Map_info | Positive | Positive_clone | Y39B6A | Inferred_automatically | From sequence, transcript, pseudogene data | |
Interpolated_map_position | V | 18.4915 | ||||
Reference | WBPaper00038444 | |||||
WBPaper00038491 | ||||||
WBPaper00044885 | ||||||
WBPaper00055090 | ||||||
Method | Gene |