WormBase Tree Display for Gene: WBGene00012618
expand all nodes | collapse all nodes | view schema
| WBGene00012618 | SMap | S_parent | Sequence | Y38H6C | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | dct-10 | Paper_evidence | WBPaper00031095 | ||||||
| Person_evidence | WBPerson1157 | |||||||||
| Sequence_name | Y38H6C.5 | |||||||||
| Molecular_name | Y38H6C.5 | |||||||||
| Other_name | CELE_Y38H6C.5 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | dct-10 | |||||||||
| DB_info | Database | AceView | gene | 5U981 | ||||||
| WormQTL | gene | WBGene00012618 | ||||||||
| WormFlux | gene | WBGene00012618 | ||||||||
| NDB | locus_tag | CELE_Y38H6C.5 | ||||||||
| NCBI | gene | 189686 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 08 Nov 2007 16:33:50 | WBPerson2970 | Name_change | CGC_name | dct-10 | |||||
| 3 | 13 Nov 2017 16:58:05 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | dct | |||||||||
| Allele (133) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog (13) | ||||||||||
| Paralog | WBGene00014814 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| Structured_description | Automated_description | Enriched in neurons and retrovesicular ganglion based on RNA-seq and microarray studies. Is affected by several genes including daf-16; daf-2; and eat-2 based on microarray; tiling array; and RNA-seq studies. Is affected by ten chemicals including Alovudine; Sodium Chloride; and Psoralens based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | Y38H6C.5:wp194 | ||||||||
| Y38H6C.5:wp227 | ||||||||||
| Y38H6C.5:wp262 | ||||||||||
| Corresponding_pseudogene | Y38H6C.5 | |||||||||
| Associated_feature | WBsf662247 | |||||||||
| WBsf1003579 | ||||||||||
| WBsf1003580 | ||||||||||
| WBsf1021974 | ||||||||||
| Experimental_info | Expr_pattern | Expr1025288 | ||||||||
| Expr1159603 | ||||||||||
| Expr2010809 | ||||||||||
| Expr2029046 | ||||||||||
| Microarray_results | SMD_Y38H6C.5 | |||||||||
| 190665_at | ||||||||||
| Aff_Y38H6C.5 | ||||||||||
| GPL19516_CGZ0044700 | ||||||||||
| GPL21109_Y38H6C.5 | ||||||||||
| GPL8673_Y38H6C_5P01523 | ||||||||||
| GPL8673_Y38H6C_5P02025 | ||||||||||
| Expression_cluster (98) | ||||||||||
| Interaction | WBInteraction000345348 | |||||||||
| WBInteraction000418107 | ||||||||||
| WBInteraction000561112 | ||||||||||
| Map_info | Map | V | Position | 25.0059 | Error | 0.000267 | ||||
| Positive | Positive_clone | Y38H6C | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00031095 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
