WormBase Tree Display for Gene: WBGene00012584
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| WBGene00012584 | SMap | S_parent | Sequence | Y38E10A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-100 | Person_evidence | WBPerson260 | |||||
| WBPerson83 | |||||||||
| Sequence_name | Y38E10A.6 | ||||||||
| Molecular_name | Y38E10A.6a | ||||||||
| Y38E10A.6a.1 | |||||||||
| CE35654 | |||||||||
| Y38E10A.6b | |||||||||
| CE35655 | |||||||||
| Y38E10A.6b.1 | |||||||||
| Other_name | CELE_Y38E10A.6 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-100 | ||||||||
| DB_info | Database | AceView | gene | 2M872 | |||||
| WormQTL | gene | WBGene00012584 | |||||||
| WormFlux | gene | WBGene00012584 | |||||||
| NDB | locus_tag | CELE_Y38E10A.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012584|UniProtKB=Q7K714 | |||||||
| family | PTHR24339 | ||||||||
| NCBI | gene | 174894 | |||||||
| RefSeq | protein | NM_001027258.5 | |||||||
| NM_001027257.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF343180 | |||||||
| TrEMBL | UniProtAcc | Q9U2M6 | |||||||
| Q7K714 | |||||||||
| UniProt_GCRP | UniProtAcc | Q7K714 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 28 May 2010 15:24:57 | WBPerson2970 | Name_change | CGC_name | ceh-100 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (967) | |||||||||
| Possibly_affected_by | WBVar02154110 | ||||||||
| Strain | WBStrain00047510 | ||||||||
| WBStrain00049264 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog | WBGene00038730 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||
| WBGene00038718 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
| OTIPU.nOt.2.0.1.g08907 | Oscheius tipulae | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g6215 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00093277 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00279481 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00289727 | Trichuris muris | From_analysis | WormBase-Compara | ||||||
| Paralog | WBGene00000429 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00000430 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00000432 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022554 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00018446 | |||||||||
| WBGene00044032 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00018022 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | ceh-100 is a divergent homeobox gene; it encodes 12 homeodomains; it is located close to ceh-99 on chromosome II and may be a paralog; most homeodomain proteins bind DNA and function as transcription factors; ceh-100 is involved in embryo development and response to food; ceh-100 is expressed widely. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00024925 | |||||||||
| WBPaper00029055 | |||||||||
| WBPaper00036375 | |||||||||
| WBPaper00045524 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 19 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in brain development; neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed widely. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38E10A.6a | |||||||
| Y38E10A.6b | |||||||||
| Corresponding_CDS_history | Y38E10A.6:wp52 | ||||||||
| Y38E10A.6:wp109 | |||||||||
| Corresponding_transcript | Y38E10A.6a.1 | ||||||||
| Y38E10A.6b.1 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature | WBsf650660 | ||||||||
| WBsf666260 | |||||||||
| WBsf666261 | |||||||||
| WBsf978276 | |||||||||
| WBsf990144 | |||||||||
| WBsf990145 | |||||||||
| WBsf990146 | |||||||||
| WBsf224082 | |||||||||
| Transcription_factor | WBTranscriptionFactor000577 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00061545 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00020277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056027 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036848 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7712 | ||||||||
| Expr15651 | |||||||||
| Expr1023597 | |||||||||
| Expr1035570 | |||||||||
| Expr1159550 | |||||||||
| Expr1170018 | |||||||||
| Expr2009857 | |||||||||
| Expr2028097 | |||||||||
| Drives_construct | WBCnstr00012857 | ||||||||
| WBCnstr00042429 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (109) | |||||||||
| Interaction (13) | |||||||||
| Map_info | Map | II | Position | 10.4405 | Error | 0.013668 | |||
| Positive | Positive_clone | Y38E10A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00060123 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
