WormBase Tree Display for Gene: WBGene00018022
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| WBGene00018022 | SMap | S_parent | Sequence | F34D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ceh-87 | Person_evidence | WBPerson83 | |||||
| Sequence_name | F34D6.2 | ||||||||
| Molecular_name | F34D6.2 | ||||||||
| F34D6.2.1 | |||||||||
| CE39574 | |||||||||
| Other_name | CELE_F34D6.2 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ceh-87 | ||||||||
| DB_info | Database | AceView | gene | 2C972 | |||||
| WormQTL | gene | WBGene00018022 | |||||||
| WormFlux | gene | WBGene00018022 | |||||||
| NDB | locus_tag | CELE_F34D6.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00018022|UniProtKB=O17184 | |||||||
| family | PTHR24339 | ||||||||
| NCBI | gene | 185241 | |||||||
| RefSeq | protein | NM_061931.5 | |||||||
| TREEFAM | TREEFAM_ID | TF354309 | |||||||
| TrEMBL | UniProtAcc | O17184 | |||||||
| UniProt_GCRP | UniProtAcc | O17184 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:59 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Sep 2011 16:40:16 | WBPerson2970 | Name_change | CGC_name | ceh-87 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ceh | ||||||||
| Allele (48) | |||||||||
| Strain | WBStrain00036643 | ||||||||
| WBStrain00036727 | |||||||||
| WBStrain00049282 | |||||||||
| WBStrain00048961 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00000429 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00000430 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00000432 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012584 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022554 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00044032 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | ceh-87 is a divergent homeobox gene; it encodes one homeodomain; most homeodomain proteins bind DNA and function as transcription factors; ceh-87 is located on chromosome II near a repetitive region, where several other divergent homeobox genes are; ceh-87 is involved in reproduction; ceh-87 is expressed in the rectal gland cell, head neurons, and the tail neurons. | Paper_evidence | WBPaper00046864 | |||||
| WBPaper00029055 | |||||||||
| WBPaper00037950 | |||||||||
| Person_evidence | WBPerson83 | ||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 19 Apr 2017 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in central nervous system development; neuron differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Expressed in head neurons; rectal gland cell; and tail neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F34D6.2 | |||||||
| Corresponding_CDS_history | F34D6.2:wp153 | ||||||||
| Corresponding_transcript | F34D6.2.1 | ||||||||
| Associated_feature | WBsf978707 | ||||||||
| WBsf987011 | |||||||||
| WBsf987012 | |||||||||
| WBsf222782 | |||||||||
| WBsf222783 | |||||||||
| Transcription_factor | WBTranscriptionFactor000777 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00046255 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr7539 | ||||||||
| Expr15610 | |||||||||
| Expr1021211 | |||||||||
| Expr1150141 | |||||||||
| Expr1170058 | |||||||||
| Expr2009911 | |||||||||
| Expr2028151 | |||||||||
| Drives_construct | WBCnstr00012684 | ||||||||
| WBCnstr00026833 | |||||||||
| WBCnstr00042443 | |||||||||
| Construct_product | WBCnstr00026833 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (26) | |||||||||
| Interaction (54) | |||||||||
| Map_info | Map | II | Position | -12.1503 | Error | 0.002603 | |||
| Positive | Positive_clone | F34D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00060123 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
