WormBase Tree Display for Gene: WBGene00012425
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| WBGene00012425 | SMap | S_parent | Sequence | Y10G11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dlc-4 | Person_evidence | WBPerson75 | |||||
| WBPerson3088 | |||||||||
| Sequence_name | Y10G11A.3 | ||||||||
| Molecular_name | Y10G11A.3a | ||||||||
| Y10G11A.3a.1 | |||||||||
| CE44469 | |||||||||
| Y10G11A.3b | |||||||||
| CE50114 | |||||||||
| Y10G11A.3b.1 | |||||||||
| Other_name | CELE_Y10G11A.3 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dlc-4 | ||||||||
| DB_info | Database | AceView | gene | 4R391 | |||||
| WormQTL | gene | WBGene00012425 | |||||||
| WormFlux | gene | WBGene00012425 | |||||||
| NDB | locus_tag | CELE_Y10G11A.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012425|UniProtKB=Q7YTJ8 | |||||||
| family | PTHR11886 | ||||||||
| NCBI | gene | 3565151 | |||||||
| RefSeq | protein | NM_001028260.4 | |||||||
| NM_001307186.1 | |||||||||
| TrEMBL | UniProtAcc | A0A078BPK5 | |||||||
| Q7YTJ8 | |||||||||
| UniProt_GCRP | UniProtAcc | Q7YTJ8 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Oct 2007 10:50:23 | WBPerson2970 | Name_change | CGC_name | dlc-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dlc | ||||||||
| Allele (123) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00000453 | ||||||||
| 00000454 | |||||||||
| 00000455 | |||||||||
| 00000456 | |||||||||
| 00000457 | |||||||||
| 00000458 | |||||||||
| 00000459 | |||||||||
| 00119557 | |||||||||
| 00119558 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001005 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010888 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00012424 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013712 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00043067 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | dlc-4 encodes a putative dynein light chain 1; DLC-4 is orthologous to human DYNLL1 (OMIM:601562) and DYNLL2 (OMIM:608942), but much more divergent from them than its paralog DLC-1; its other paralogs are DLC-3 (97% identical to DLC-4), DLC-2, and DLC-5/-6. | Paper_evidence | WBPaper00029395 | |||||
| WBPaper00030897 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 29 Aug 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in microtubule-based process. Predicted to be located in cytoplasm and microtubule. Predicted to be part of cytoplasmic dynein complex. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y10G11A.3a | |||||||
| Y10G11A.3b | |||||||||
| Corresponding_CDS_history | Y10G11A.3:wp211 | ||||||||
| Corresponding_transcript | Y10G11A.3a.1 | ||||||||
| Y10G11A.3b.1 | |||||||||
| Other_sequence | SR04753 | ||||||||
| ES672858.1 | |||||||||
| Associated_feature | WBsf998874 | ||||||||
| WBsf229600 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00102933 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102934 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024601 | ||||||||
| Expr1158829 | |||||||||
| Expr2010944 | |||||||||
| Expr2029183 | |||||||||
| Microarray_results (12) | |||||||||
| Expression_cluster (42) | |||||||||
| Map_info | Map | IV | Position | 15.0797 | |||||
| Positive | Positive_clone | Y10G11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029395 | ||||||||
| WBPaper00039787 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [140923 pad] Modified Map position as it was a reverse physical that could not be fixed by automated methods. | |||||||||
| Method | Gene |
