WormBase Tree Display for Gene: WBGene00012424
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| WBGene00012424 | SMap | S_parent | Sequence | Y10G11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dlc-3 | Person_evidence | WBPerson3088 | |||||
| Sequence_name | Y10G11A.2 | ||||||||
| Molecular_name | Y10G11A.2a | ||||||||
| Y10G11A.2a.1 | |||||||||
| CE30704 | |||||||||
| Y10G11A.2b | |||||||||
| CE40526 | |||||||||
| Y10G11A.2b.1 | |||||||||
| Other_name | CELE_Y10G11A.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dlc-3 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00012424 | |||||
| WormFlux | gene | WBGene00012424 | |||||||
| NDB | locus_tag | CELE_Y10G11A.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012424|UniProtKB=A0AAC1 | |||||||
| family | PTHR11886 | ||||||||
| NCBI | gene | 259606 | |||||||
| RefSeq | protein | NM_001083249.4 | |||||||
| NM_001083248.5 | |||||||||
| TREEFAM | TREEFAM_ID | TF354234 | |||||||
| TrEMBL | UniProtAcc | Q8MPS5 | |||||||
| A0AAC1 | |||||||||
| UniProt_GCRP | UniProtAcc | A0AAC1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | dlc-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dlc | ||||||||
| Allele (213) | |||||||||
| Strain | WBStrain00047683 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00004211 | ||||||||
| 00004212 | |||||||||
| 00004213 | |||||||||
| 00004214 | |||||||||
| 00004215 | |||||||||
| 00004216 | |||||||||
| 00004217 | |||||||||
| 00119555 | |||||||||
| 00119556 | |||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00001005 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00010888 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00012425 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013712 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00043067 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | dlc-3 encodes, by alternative splicing, two isoforms of a putative dynein light chain 1; DLC-3 is orthologous to human DYNLL1 (OMIM:601562) and DYNLL2 (OMIM:608942), but much more divergent from them than its paralog DLC-1; its other paralogs are DLC-4 (97% identical to DLC-3), DLC-2, and DLC-5/-6; DLC-3 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00029395 | |||||
| WBPaper00030897 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 29 Aug 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable dynein intermediate chain binding activity. Predicted to be involved in microtubule-based process. Predicted to be located in cytoplasm and microtubule. Predicted to be part of cytoplasmic dynein complex. Expressed in body wall musculature; distal tip cell; and vulval muscle. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y10G11A.2a | |||||||
| Y10G11A.2b | |||||||||
| Corresponding_transcript | Y10G11A.2a.1 | ||||||||
| Y10G11A.2b.1 | |||||||||
| Other_sequence | Dviv_isotig19997 | ||||||||
| Associated_feature | WBsf229599 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00102933 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055292 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102934 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9592 | ||||||||
| Expr1018420 | |||||||||
| Expr1158828 | |||||||||
| Expr2010943 | |||||||||
| Expr2029182 | |||||||||
| Drives_construct | WBCnstr00014156 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (89) | |||||||||
| Interaction | WBInteraction000570419 | ||||||||
| Map_info | Map | IV | Position | 15.0762 | Error | 0.000469 | |||
| Positive | Positive_clone | Y10G11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00029395 | ||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
