WormBase Tree Display for Gene: WBGene00012251

WBGene00012251 SMap: S_parent: Sequence: W04E12
  Identity: Version: 2
    Name: CGC_name: clec-49 Person_evidence: WBPerson655
      Sequence_name: W04E12.6
      Molecular_name: W04E12.6
        W04E12.6.1
        CE19001
      Other_name: CELE_W04E12.6 Accession_evidence: NDB BX284605
      Public_name: clec-49
    DB_info: Database: AceView gene 5U220
        WormQTL gene WBGene00012251
        WormFlux gene WBGene00012251
        NDB locus_tag CELE_W04E12.6
        Panther gene CAEEL|WormBase=WBGene00012251|UniProtKB=Q9XUL6
          family PTHR22803
        NCBI gene 180298
        RefSeq protein NM_075428.5
        TrEMBL UniProtAcc Q9XUL6
        UniProt_GCRP UniProtAcc Q9XUL6
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 29 Apr 2005 13:53:46 WBPerson2970 Name_change: CGC_name: clec-49
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: clec
    Allele (105)
    Strain: WBStrain00032559
    RNASeq_FPKM (74)
    GO_annotation: 00101866
      00101867
      00101868
    Ortholog (60)
    Paralog (12)
    Structured_description: Concise_description: clec-49 encodes a protein containing two calcium-dependent (C-type) lectin domains; by sequence analysis, CLEC-49 is predicted to be a secreted protein that binds carbohydrates; the Toxocara canis (canine roundworm) TES-32 protein, for which CLEC-49 is one of the most closely related C. elegans proteins, has been shown to reside in the parasite epicuticle and, in vitro, binds both galactose- and mannose-type monosaccharides. Paper_evidence: WBPaper00038242
          Curator_confirmed: WBPerson1843
          Date_last_updated: 25 Apr 2011 00:00:00
      Automated_description: Predicted to enable monosaccharide binding activity and signaling receptor activity. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: W04E12.6
    Corresponding_transcript: W04E12.6.1
    Other_sequence: Oden_isotig12519
      ES410101.1
      ES412665.1
      Oden_isotig20940
      Oden_isotig23694
      Oden_isotig12517
    Associated_feature: WBsf653587
  Experimental_info: RNAi_result: WBRNAi00019597 Inferred_automatically: RNAi_primary
      WBRNAi00036277 Inferred_automatically: RNAi_primary
      WBRNAi00054777 Inferred_automatically: RNAi_primary
      WBRNAi00001425 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1158313
      Expr2010181
      Expr2028423
    Microarray_results (17)
    Expression_cluster (217)
    Interaction (92)
  Map_info: Map: V Position: 23.194 Error: 0.043045
    Positive: Positive_clone: W04E12 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038242
    WBPaper00038491
    WBPaper00044859
    WBPaper00045865
    WBPaper00055090
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene