WormBase Tree Display for Gene: WBGene00012251
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WBGene00012251 | SMap | S_parent | Sequence | W04E12 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (105) | |||||||
Strain | WBStrain00032559 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00101866 | ||||||
00101867 | |||||||
00101868 | |||||||
Ortholog (60) | |||||||
Paralog (12) | |||||||
Structured_description | Concise_description | clec-49 encodes a protein containing two calcium-dependent (C-type) lectin domains; by sequence analysis, CLEC-49 is predicted to be a secreted protein that binds carbohydrates; the Toxocara canis (canine roundworm) TES-32 protein, for which CLEC-49 is one of the most closely related C. elegans proteins, has been shown to reside in the parasite epicuticle and, in vitro, binds both galactose- and mannose-type monosaccharides. | Paper_evidence | WBPaper00038242 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 25 Apr 2011 00:00:00 | ||||||
Automated_description | Predicted to enable monosaccharide binding activity and signaling receptor activity. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | W04E12.6 | |||||
Corresponding_transcript | W04E12.6.1 | ||||||
Other_sequence | Oden_isotig12519 | ||||||
ES410101.1 | |||||||
ES412665.1 | |||||||
Oden_isotig20940 | |||||||
Oden_isotig23694 | |||||||
Oden_isotig12517 | |||||||
Associated_feature | WBsf653587 | ||||||
Experimental_info | RNAi_result | WBRNAi00019597 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036277 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00054777 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001425 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1158313 | ||||||
Expr2010181 | |||||||
Expr2028423 | |||||||
Microarray_results (17) | |||||||
Expression_cluster (217) | |||||||
Interaction (92) | |||||||
Map_info | Map | V | Position | 23.194 | Error | 0.043045 | |
Positive | Positive_clone | W04E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00038242 | ||||||
WBPaper00038491 | |||||||
WBPaper00044859 | |||||||
WBPaper00045865 | |||||||
WBPaper00055090 | |||||||
WBPaper00065331 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |