WormBase Tree Display for Gene: WBGene00012251
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| WBGene00012251 | SMap | S_parent | Sequence | W04E12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | clec-49 | Person_evidence | WBPerson655 | |||||
| Sequence_name | W04E12.6 | ||||||||
| Molecular_name | W04E12.6 | ||||||||
| W04E12.6.1 | |||||||||
| CE19001 | |||||||||
| Other_name | CELE_W04E12.6 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | clec-49 | ||||||||
| DB_info | Database | AceView | gene | 5U220 | |||||
| WormQTL | gene | WBGene00012251 | |||||||
| WormFlux | gene | WBGene00012251 | |||||||
| NDB | locus_tag | CELE_W04E12.6 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012251|UniProtKB=Q9XUL6 | |||||||
| family | PTHR22803 | ||||||||
| NCBI | gene | 180298 | |||||||
| RefSeq | protein | NM_075428.5 | |||||||
| TrEMBL | UniProtAcc | Q9XUL6 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XUL6 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 29 Apr 2005 13:53:46 | WBPerson2970 | Name_change | CGC_name | clec-49 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | clec | ||||||||
| Allele | WBVar01499709 | ||||||||
| WBVar00091262 | |||||||||
| WBVar02121909 | |||||||||
| WBVar02011147 | |||||||||
| WBVar01978259 | |||||||||
| WBVar02011148 | |||||||||
| WBVar02011149 | |||||||||
| WBVar02074364 | |||||||||
| WBVar01102402 | |||||||||
| WBVar00488672 | |||||||||
| WBVar00488673 | |||||||||
| WBVar01102403 | |||||||||
| WBVar00488674 | |||||||||
| WBVar01102404 | |||||||||
| WBVar00488675 | |||||||||
| WBVar01102405 | |||||||||
| WBVar00488676 | |||||||||
| WBVar01102406 | |||||||||
| WBVar01102407 | |||||||||
| WBVar00488677 | |||||||||
| WBVar02122473 | |||||||||
| WBVar00488678 | |||||||||
| WBVar01102408 | |||||||||
| WBVar01102409 | |||||||||
| WBVar00488679 | |||||||||
| WBVar01102410 | |||||||||
| WBVar00488680 | |||||||||
| WBVar02075299 | |||||||||
| WBVar01102411 | |||||||||
| WBVar00488681 | |||||||||
| WBVar01102412 | |||||||||
| WBVar00488682 | |||||||||
| WBVar01102413 | |||||||||
| WBVar01524473 | |||||||||
| WBVar01499566 | |||||||||
| WBVar01524474 | |||||||||
| WBVar02011636 | |||||||||
| WBVar01524475 | |||||||||
| WBVar02100774 | |||||||||
| WBVar01524476 | |||||||||
| WBVar02011637 | |||||||||
| WBVar01524477 | |||||||||
| WBVar02100775 | |||||||||
| WBVar01524478 | |||||||||
| WBVar01524479 | |||||||||
| WBVar02152032 | |||||||||
| WBVar01524480 | |||||||||
| WBVar01926079 | |||||||||
| WBVar01524481 | |||||||||
| WBVar01926080 | |||||||||
| WBVar01598360 | |||||||||
| WBVar01926081 | |||||||||
| WBVar01524482 | |||||||||
| WBVar01524483 | |||||||||
| WBVar01926082 | |||||||||
| WBVar01524484 | |||||||||
| WBVar01926083 | |||||||||
| WBVar02119186 | |||||||||
| WBVar01524485 | |||||||||
| WBVar01926084 | |||||||||
| WBVar01524486 | |||||||||
| WBVar01524487 | |||||||||
| WBVar01524488 | |||||||||
| WBVar01829377 | |||||||||
| WBVar01524489 | |||||||||
| WBVar01524490 | |||||||||
| WBVar01524491 | |||||||||
| WBVar01524492 | |||||||||
| WBVar02119747 | |||||||||
| WBVar01524493 | |||||||||
| WBVar01524494 | |||||||||
| WBVar01524495 | |||||||||
| WBVar01524496 | |||||||||
| WBVar01524497 | |||||||||
| WBVar01524498 | |||||||||
| WBVar02124915 | |||||||||
| WBVar02121052 | |||||||||
| WBVar02120873 | |||||||||
| WBVar02123635 | |||||||||
| WBVar02112783 | |||||||||
| WBVar02112784 | |||||||||
| WBVar00273535 | |||||||||
| WBVar02083172 | |||||||||
| WBVar01499446 | |||||||||
| WBVar02083173 | |||||||||
| WBVar02083174 | |||||||||
| WBVar02100470 | |||||||||
| WBVar02083175 | |||||||||
| WBVar02083176 | |||||||||
| WBVar02083177 | |||||||||
| WBVar00093565 | |||||||||
| WBVar00071485 | |||||||||
| WBVar02120728 | |||||||||
| WBVar00071486 | |||||||||
| WBVar00071487 | |||||||||
| WBVar00071488 | |||||||||
| WBVar01498549 | |||||||||
| WBVar02122403 | |||||||||
| WBVar01499299 | |||||||||
| WBVar02121489 | |||||||||
| WBVar02025932 | |||||||||
| WBVar02025933 | |||||||||
| WBVar02122975 | |||||||||
| WBVar01498958 | |||||||||
| WBVar02124642 | |||||||||
| Strain | WBStrain00032559 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00101866 | ||||||||
| 00101867 | |||||||||
| 00101868 | |||||||||
| Ortholog (60) | |||||||||
| Paralog (12) | |||||||||
| Structured_description | Concise_description | clec-49 encodes a protein containing two calcium-dependent (C-type) lectin domains; by sequence analysis, CLEC-49 is predicted to be a secreted protein that binds carbohydrates; the Toxocara canis (canine roundworm) TES-32 protein, for which CLEC-49 is one of the most closely related C. elegans proteins, has been shown to reside in the parasite epicuticle and, in vitro, binds both galactose- and mannose-type monosaccharides. | Paper_evidence | WBPaper00038242 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Apr 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable monosaccharide binding activity and signaling receptor activity. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | W04E12.6 | |||||||
| Corresponding_transcript | W04E12.6.1 | ||||||||
| Other_sequence | Oden_isotig12519 | ||||||||
| ES410101.1 | |||||||||
| ES412665.1 | |||||||||
| Oden_isotig20940 | |||||||||
| Oden_isotig23694 | |||||||||
| Oden_isotig12517 | |||||||||
| Associated_feature | WBsf653587 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00019597 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036277 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00054777 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001425 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1158313 | ||||||||
| Expr2010181 | |||||||||
| Expr2028423 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (217) | |||||||||
| Interaction (92) | |||||||||
| Map_info | Map | V | Position | 23.194 | Error | 0.043045 | |||
| Positive | Positive_clone | W04E12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038242 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044859 | |||||||||
| WBPaper00045865 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
