WormBase Tree Display for Gene: WBGene00012143

WBGene00012143 SMap: S_parent: Sequence: T28H10
  Identity: Version: 1
    Name: Sequence_name: T28H10.2
      Molecular_name: T28H10.2
        T28H10.2.1
        CE41031
      Other_name: CELE_T28H10.2 Accession_evidence: NDB BX284605
      Public_name: T28H10.2
    DB_info: Database: AceView gene 5M990
        WormQTL gene WBGene00012143
        WormFlux gene WBGene00012143
        NDB locus_tag CELE_T28H10.2
        Panther gene CAEEL|WormBase=WBGene00012143|UniProtKB=Q22857
          family PTHR15854
        NCBI gene 189062
        RefSeq protein NM_073735.6
        TREEFAM TREEFAM_ID TF315956
        TrEMBL UniProtAcc Q22857
        UniProt_GCRP UniProtAcc Q22857
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:53 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (41)
    RNASeq_FPKM (74)
    Ortholog: WBGene00041859 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00052556 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00162885 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00122243 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      CBOVI.g943 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g12904 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g4983 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g18531 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9261 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6142 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2604 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g24892 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18452 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-T28H10.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold33.g151 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00287.g8727 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19935 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_018324 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_50173000 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g16033 Caenorhabditis elegans From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-070912-5 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      HGNC:23187 Homo sapiens From_analysis: OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      MGI:1914276 Mus musculus From_analysis: OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      RGD:1359473 Rattus norvegicus From_analysis: OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
    Paralog: WBGene00003104 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00008260 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00008993 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00016196 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00015794 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00012917 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00044557 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in hypodermis; muscle cell; and sensory neurons based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including methylmercuric chloride; D-glucose; and Psoralens based on microarray and RNA-seq studies. Human THAP4 enables several functions, including heme binding activity; identical protein binding activity; and peroxynitrite isomerase activity. Is predicted to encode a protein with the following domains: ShK domain-like; Calycin; ShKT domain; THAP4-like, heme-binding beta-barrel domain; and Nitrobindin family. Is an ortholog of human THAP4 (THAP domain containing 4). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T28H10.2
    Corresponding_CDS_history: T28H10.2:wp175
    Corresponding_transcript: T28H10.2.1
    Other_sequence: CJC16163_1
    Associated_feature: WBsf653227
      WBsf669512
      WBsf234689
      WBsf234690
  Experimental_info: RNAi_result: WBRNAi00019416 Inferred_automatically: RNAi_primary
      WBRNAi00054447 Inferred_automatically: RNAi_primary
      WBRNAi00036106 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027593
      Expr1157991
      Expr2006637
      Expr2024854
    Drives_construct: WBCnstr00030109
    Construct_product: WBCnstr00030109
    Microarray_results (23)
    Expression_cluster (171)
    Interaction: WBInteraction000032323
      WBInteraction000335156
      WBInteraction000369055
      WBInteraction000369066
      WBInteraction000435239
      WBInteraction000439234
      WBInteraction000467838
      WBInteraction000585598
  Map_info: Positive: Positive_clone: T28H10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 4.43285
  Reference: WBPaper00031003
    WBPaper00038491
    WBPaper00055090
  Method: Gene