WormBase Tree Display for Gene: WBGene00012143
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| WBGene00012143 | SMap | S_parent | Sequence | T28H10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | T28H10.2 | |||||||
| Molecular_name | T28H10.2 | ||||||||
| T28H10.2.1 | |||||||||
| CE41031 | |||||||||
| Other_name | CELE_T28H10.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | T28H10.2 | ||||||||
| DB_info | Database | AceView | gene | 5M990 | |||||
| WormQTL | gene | WBGene00012143 | |||||||
| WormFlux | gene | WBGene00012143 | |||||||
| NDB | locus_tag | CELE_T28H10.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012143|UniProtKB=Q22857 | |||||||
| family | PTHR15854 | ||||||||
| NCBI | gene | 189062 | |||||||
| RefSeq | protein | NM_073735.6 | |||||||
| TREEFAM | TREEFAM_ID | TF315956 | |||||||
| TrEMBL | UniProtAcc | Q22857 | |||||||
| UniProt_GCRP | UniProtAcc | Q22857 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar00009170 | ||||||||
| WBVar00009175 | |||||||||
| WBVar02031937 | |||||||||
| WBVar01055445 | |||||||||
| WBVar01055446 | |||||||||
| WBVar01055447 | |||||||||
| WBVar01055448 | |||||||||
| WBVar01055449 | |||||||||
| WBVar01055450 | |||||||||
| WBVar01055451 | |||||||||
| WBVar01055452 | |||||||||
| WBVar01055453 | |||||||||
| WBVar01055454 | |||||||||
| WBVar01499547 | |||||||||
| WBVar01055455 | |||||||||
| WBVar01975062 | |||||||||
| WBVar01499013 | |||||||||
| WBVar00272579 | |||||||||
| WBVar00272580 | |||||||||
| WBVar02137289 | |||||||||
| WBVar01868074 | |||||||||
| WBVar01868075 | |||||||||
| WBVar01868076 | |||||||||
| WBVar01868077 | |||||||||
| WBVar01868078 | |||||||||
| WBVar01868079 | |||||||||
| WBVar02061468 | |||||||||
| WBVar02061469 | |||||||||
| WBVar00472958 | |||||||||
| WBVar00472959 | |||||||||
| WBVar00472960 | |||||||||
| WBVar00472961 | |||||||||
| WBVar00472962 | |||||||||
| WBVar00472963 | |||||||||
| WBVar01500212 | |||||||||
| WBVar01500213 | |||||||||
| WBVar00277390 | |||||||||
| WBVar01499299 | |||||||||
| WBVar02124251 | |||||||||
| WBVar01492499 | |||||||||
| WBVar01499316 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00003104 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008260 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00008993 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00016196 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00015794 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00012917 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00044557 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Enriched in hypodermis; muscle cell; and sensory neurons based on tiling array; RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seventeen chemicals including methylmercuric chloride; D-glucose; and Psoralens based on microarray and RNA-seq studies. Human THAP4 enables several functions, including heme binding activity; identical protein binding activity; and peroxynitrite isomerase activity. Is predicted to encode a protein with the following domains: ShK domain-like; Calycin; ShKT domain; THAP4-like, heme-binding beta-barrel domain; and Nitrobindin family. Is an ortholog of human THAP4 (THAP domain containing 4). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T28H10.2 | |||||||
| Corresponding_CDS_history | T28H10.2:wp175 | ||||||||
| Corresponding_transcript | T28H10.2.1 | ||||||||
| Other_sequence | CJC16163_1 | ||||||||
| Associated_feature | WBsf653227 | ||||||||
| WBsf669512 | |||||||||
| WBsf234689 | |||||||||
| WBsf234690 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019416 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00054447 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036106 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1027593 | ||||||||
| Expr1157991 | |||||||||
| Expr2006637 | |||||||||
| Expr2024854 | |||||||||
| Drives_construct | WBCnstr00030109 | ||||||||
| Construct_product | WBCnstr00030109 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (171) | |||||||||
| Interaction | WBInteraction000032323 | ||||||||
| WBInteraction000335156 | |||||||||
| WBInteraction000369055 | |||||||||
| WBInteraction000369066 | |||||||||
| WBInteraction000435239 | |||||||||
| WBInteraction000439234 | |||||||||
| WBInteraction000467838 | |||||||||
| WBInteraction000585598 | |||||||||
| Map_info | Positive | Positive_clone | T28H10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | V | 4.43285 | |||||||
| Reference | WBPaper00031003 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| Method | Gene |
