WormBase Tree Display for Gene: WBGene00011979
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| WBGene00011979 | SMap | S_parent | Sequence | T24B8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | sysm-1 | |||||||
| Sequence_name | T24B8.5 | ||||||||
| Molecular_name | T24B8.5 | ||||||||
| T24B8.5.1 | |||||||||
| CE41161 | |||||||||
| Other_name | CELE_T24B8.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | sysm-1 | ||||||||
| DB_info | Database | AceView | gene | 2J372 | |||||
| WormQTL | gene | WBGene00011979 | |||||||
| WormFlux | gene | WBGene00011979 | |||||||
| NDB | locus_tag | CELE_T24B8.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00011979|UniProtKB=Q22714 | |||||||
| family | PTHR21724 | ||||||||
| NCBI | gene | 188838 | |||||||
| RefSeq | protein | NM_063536.5 | |||||||
| TREEFAM | TREEFAM_ID | TF319943 | |||||||
| TrEMBL | UniProtAcc | Q22714 | |||||||
| UniProt_GCRP | UniProtAcc | Q22714 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:53 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Mar 2020 18:23:32 | WBPerson1983 | Name_change | CGC_name | sysm-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | sysm | ||||||||
| Allele (18) | |||||||||
| Strain | WBStrain00037353 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00076167 | ||||||||
| 00105579 | |||||||||
| 00105590 | |||||||||
| Ortholog | WBGene00053235 | Caenorhabditis remanei | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00026151 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| Inparanoid_8 | |||||||||
| WormBase-Compara | |||||||||
| WBGene00146796 | Caenorhabditis brenneri | From_analysis | TreeFam | ||||||
| CSP26.g16027 | Caenorhabditis zanzibari | From_analysis | WormBase-Compara | ||||||
| CSP31.g27304 | Caenorhabditis uteleia | From_analysis | WormBase-Compara | ||||||
| CSP40.g985 | Caenorhabditis tribulationis | From_analysis | WormBase-Compara | ||||||
| Cni-T24B8.5 | Caenorhabditis nigoni | From_analysis | WormBase-Compara | ||||||
| FL83_20686 | Caenorhabditis latens | From_analysis | WormBase-Compara | ||||||
| GCK72_005659 | Caenorhabditis remanei | From_analysis | WormBase-Compara | ||||||
| chrII_pilon.g5403 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | T24B8.5 encodes an ShK-like toxin peptide containing a domain rich in cysteine residues found in the sea anemone potassium channel inhibitor ShK; T24B8.5 expression is regulated by the PMK-1/p38 MAPK signaling pathway and the ATF-7 transcription factor, which is a downstream target of PMK-1. | Paper_evidence | WBPaper00035315 | |||||
| WBPaper00036086 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 07 Apr 2010 00:00:00 | ||||||||
| Automated_description | Involved in antibacterial innate immune response. Expressed in intestine. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T24B8.5 | |||||||
| Corresponding_CDS_history | T24B8.5:wp176 | ||||||||
| Corresponding_transcript | T24B8.5.1 | ||||||||
| Associated_feature | WBsf650399 | ||||||||
| WBsf988929 | |||||||||
| WBsf988930 | |||||||||
| WBsf988931 | |||||||||
| WBsf988932 | |||||||||
| WBsf1012799 | |||||||||
| WBsf1012800 | |||||||||
| WBsf223601 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00054021 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00082506 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019134 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095221 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035909 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12209 | ||||||||
| Expr12687 | |||||||||
| Expr14285 | |||||||||
| Expr1010784 | |||||||||
| Expr1157565 | |||||||||
| Expr2006438 | |||||||||
| Expr2024658 | |||||||||
| Drives_construct | WBCnstr00005842 | ||||||||
| WBCnstr00005992 | |||||||||
| WBCnstr00009567 | |||||||||
| WBCnstr00030230 | |||||||||
| Construct_product | WBCnstr00030230 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (389) | |||||||||
| Interaction | WBInteraction000031660 | ||||||||
| WBInteraction000273166 | |||||||||
| WBInteraction000312566 | |||||||||
| WBInteraction000313326 | |||||||||
| WBInteraction000316497 | |||||||||
| WBInteraction000327055 | |||||||||
| WBInteraction000350455 | |||||||||
| WBInteraction000386081 | |||||||||
| WBInteraction000402651 | |||||||||
| WBInteraction000504060 | |||||||||
| WBInteraction000504351 | |||||||||
| WBInteraction000504352 | |||||||||
| WBInteraction000504892 | |||||||||
| WBInteraction000519402 | |||||||||
| WBInteraction000523972 | |||||||||
| WBInteraction000525097 | |||||||||
| WBInteraction000525352 | |||||||||
| WBInteraction000525361 | |||||||||
| WBInteraction000544065 | |||||||||
| WBInteraction000544066 | |||||||||
| WBInteraction000544067 | |||||||||
| WBInteraction000549476 | |||||||||
| WBProcess | WBbiopr:00000039 | ||||||||
| Map_info | Map | II | Position | 1.00085 | |||||
| Positive | Positive_clone | T24B8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028789 | ||||||||
| WBPaper00032196 | |||||||||
| WBPaper00032501 | |||||||||
| WBPaper00032602 | |||||||||
| WBPaper00059839 | |||||||||
| WBPaper00061133 | |||||||||
| WBPaper00061669 | |||||||||
| WBPaper00062454 | |||||||||
| WBPaper00062599 | |||||||||
| WBPaper00062938 | |||||||||
| WBPaper00065625 | |||||||||
| WBPaper00066012 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
