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WormBase Tree Display for Gene: WBGene00011503

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Name Class

WBGene00011503SMapS_parentSequenceT05G5
IdentityVersion2
NameCGC_namegcc-2Paper_evidenceWBPaper00046586
Person_evidenceWBPerson298
Sequence_nameT05G5.9
Molecular_nameT05G5.9a
T05G5.9a.1
CE34088
T05G5.9b
CE34089
T05G5.9b.1
Other_nameCELE_T05G5.9Accession_evidenceNDBBX284603
Public_namegcc-2
DB_infoDatabaseAceViewgene3K848
WormQTLgeneWBGene00011503
WormFluxgeneWBGene00011503
NDBlocus_tagCELE_T05G5.9
PanthergeneCAEEL|WormBase=WBGene00011503|UniProtKB=P34562
familyPTHR23157
NCBIgene176378
RefSeqproteinNM_001027578.5
NM_001027577.4
SwissProtUniProtAccP34562
TREEFAMTREEFAM_IDTF320667
UniProt_GCRPUniProtAccP34562
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:52WBPerson1971EventImportedInitial conversion from CDS class of WS125
225 Mar 2015 16:36:59WBPerson2970Name_changeCGC_namegcc-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classgcc
Allele (54)
StrainWBStrain00008484
RNASeq_FPKM (74)
GO_annotation00043232
Contained_in_operonCEOP3616
Ortholog (29)
ParalogWBGene00002220Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionPredicted to be located in Golgi apparatus. Is an ortholog of human GCC2 (GRIP and coiled-coil domain containing 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDST05G5.9a
T05G5.9b
Corresponding_CDS_historyT05G5.9:wp100
T05G5.9:wp101
Corresponding_transcriptT05G5.9a.1
T05G5.9b.1
Other_sequenceCBC10174_1
CBC01309_1
CBC07543_1
Associated_featureWBsf651403
WBsf667327
WBsf978986
WBsf993792
WBsf993793
WBsf227365
WBsf227366
Experimental_infoRNAi_resultWBRNAi00018250Inferred_automaticallyRNAi_primary
WBRNAi00006084Inferred_automaticallyRNAi_primary
WBRNAi00018249Inferred_automaticallyRNAi_primary
WBRNAi00052571Inferred_automaticallyRNAi_primary
Expr_patternExpr1012861
Expr1035066
Expr1156187
Expr2011961
Expr2030198
Drives_constructWBCnstr00030605
Construct_productWBCnstr00030605
Microarray_results (24)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_embryo_enriched
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_embryo_enriched
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040221:DAF-12_target_ALF9
WBPaper00042477:rsr-2(RNAi)_downregulated_RNAseq
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_downregulated
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00048762:FOG-3_associated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:PLM-neuron_enriched
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050743:elli-1(sam-3)_upregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00054758:alg-1(gk204)_downregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056868:P.aeruginosa_downregulated_smallRNA
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061527:D2023.6-mut-14_16769
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064716:paraquat_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065225:nhr-42(tm1375)_upregulated_S.aureus-infected
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
WBPaper00025032:cluster_8
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00027758:Group_I
WBPaper00028948:cep-1(gk138)+UV_upregulated
WBPaper00032062:age_regulated_genes
WBPaper00032165:A_to_C_transit_decreased
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_F
WBPaper00038060:SUMO-1_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040823:alg-1(gk214)_downregulated
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041002:HQ_3d_0.2mM_Down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00053688:E.faecium_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:Cluster_E
[cgc6390]:Cluster_F
[cgc6390]:herm_sex-enriched
[cgc6390]:oogenesis-enriched
InteractionWBInteraction000218608
WBInteraction000383674
WBInteraction000420116
WBInteraction000433175
WBInteraction000465875
WBInteraction000543833
WBInteraction000544022
WBInteraction000576296
Map_infoMapIIIPosition0.992631
PositivePositive_cloneT05G5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038455
WBPaper00038491
WBPaper00046586
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene