WormBase Tree Display for Gene: WBGene00011254

WBGene00011254 SMap: S_parent: Sequence: R12G8
  Identity: Version: 1
    Name: Sequence_name: R12G8.1
      Molecular_name: R12G8.1
        R12G8.1.1
        CE16313
      Other_name: CELE_R12G8.1 Accession_evidence: NDB BX284605
      Public_name: R12G8.1
    DB_info: Database: AceView gene 5S228
        WormQTL gene WBGene00011254
        WormFlux gene WBGene00011254
        NDB locus_tag CELE_R12G8.1
        NCBI gene 187844
        RefSeq protein NM_075085.2
        TrEMBL UniProtAcc O45720
        UniProt_GCRP UniProtAcc O45720
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (37)
    RNASeq_FPKM (74)
    GO_annotation: 00035077
    Ortholog (18)
    Paralog: WBGene00012019 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012352 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018620 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00018621 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable ATP binding activity; metal ion binding activity; and protein serine/threonine kinase activity. Predicted to be located in membrane. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R12G8.1
    Corresponding_transcript: R12G8.1.1
    Other_sequence: MI02313
      MIC06444_1
      MIC06782_1
      MIC05273_1
    Associated_feature: WBsf1002737
      WBsf1002738
      WBsf1021339
  Experimental_info: RNAi_result: WBRNAi00034897 Inferred_automatically: RNAi_primary
      WBRNAi00076616 Inferred_automatically: RNAi_primary
      WBRNAi00017798 Inferred_automatically: RNAi_primary
      WBRNAi00051861 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011823
      Expr1155520
      Expr2005622
      Expr2023839
    Drives_construct: WBCnstr00030803
    Construct_product: WBCnstr00030803
    Microarray_results (18)
    Expression_cluster: WBPaper00032528:L3_depleted
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:glr-1(+)-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044260:1-methylnicotinamide_upregulated
      WBPaper00044260:nicotinc-acid_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045390:tunicamycin_downregulated
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_7
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050561:indole_10-fold_upregulated
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
      WBPaper00050990:NMDA-neuron_enriched
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051540:exc-7(csb29);mbl-1(csb30)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
      WBPaper00053771:up_at_24h-NaCl
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00058725:sftb-1(cer6)_upregulated
      WBPaper00058725:sftb-1(cer39)_upregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059378:lmn-1(Y59C)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059763:neuron_acr-2(n2420gf)_regulated
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060634:fhod-1(tm2363)_upregulated
      WBPaper00060661:hypoxia_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061340:AIB
      WBPaper00061340:AVL
      WBPaper00061340:RIA
      WBPaper00061340:RIM
      WBPaper00061340:RMD
      WBPaper00061340:SIB
      WBPaper00061340:SMD
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:xbx-3-DH11.5_20397
      WBPaper00061651:ADE_enriched
      WBPaper00061651:AIB_enriched
      WBPaper00061651:AIN_enriched
      WBPaper00061651:AIZ_enriched
      WBPaper00061651:M1_enriched
      WBPaper00061651:RIA_enriched
      WBPaper00061651:RIB_enriched
      WBPaper00061651:RIM_enriched
      WBPaper00061651:RIV_enriched
      WBPaper00061651:RMD_DV_enriched
      WBPaper00061651:RMD_LR_enriched
      WBPaper00061651:RMF_enriched
      WBPaper00061651:RMH_enriched
      WBPaper00061651:SMD_enriched
      WBPaper00061651:URB_enriched
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062146:MOG-7-degron_1h_regulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062497:xpf-1(tm2842)_upregulated
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064933:bcf-1(ylf1)_upregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065623:80
      WBPaper00065623:138
      WBPaper00065734:unc-25(e156)_upregulated
      WBPaper00065841:32_0
      WBPaper00065841:36_2
      WBPaper00065841:36_3
      WBPaper00065841:46_0
      WBPaper00065841:52_0
      WBPaper00065841:76_0
      WBPaper00065841:83_0
      WBPaper00065841:87_0
      WBPaper00065841:91_0
      WBPaper00065841:94_0
      WBPaper00065841:95_0
      WBPaper00065841:97_0
      WBPaper00065841:104_0
      WBPaper00065841:111_0
      WBPaper00065841:120_0
      WBPaper00065841:121_0
      WBPaper00065841:126_0
      WBPaper00065841:130_0
      WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)
      WBPaper00066232:ash-2(RNAi)_downregulated_WT
      cgc4489_group_20
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00035227:heat_shock_regulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_H
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00042548:miRISC_enriched
      WBPaper00044535:male_upregulated
      WBPaper00045015:nhr-25(RNAi)_upregulated
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      WBPaper00045263:ProLongevity-mtROS_upregulated
      WBPaper00045673:colistin_upregulated
      WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
      WBPaper00047070:N2_starvation_upregulated
    Interaction: WBInteraction000172729
      WBInteraction000198350
      WBInteraction000208863
      WBInteraction000241214
      WBInteraction000262658
      WBInteraction000295202
      WBInteraction000351430
      WBInteraction000379658
      WBInteraction000418593
      WBInteraction000420630
      WBInteraction000435926
      WBInteraction000448893
      WBInteraction000459424
  Map_info: Positive: Positive_clone: R12G8 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 13.1705
  Method: Gene