WormBase Tree Display for Gene: WBGene00011076

WBGene00011076 SMap: S_parent: Sequence: R07B1
  Identity: Version: 2
    Name: CGC_name: scav-5
      Sequence_name: R07B1.3
      Molecular_name: R07B1.3
        R07B1.3.1
        CE47857
      Other_name: CELE_R07B1.3 Accession_evidence: NDB BX284606
      Public_name: scav-5
    DB_info: Database: AceView gene XK479
        WormQTL gene WBGene00011076
        WormFlux gene WBGene00011076
        NDB locus_tag CELE_R07B1.3
        Panther gene CAEEL|WormBase=WBGene00011076|UniProtKB=Q09606
          family PTHR11923
        NCBI gene 181200
        RefSeq protein NM_077250.7
        SwissProt UniProtAcc Q09606
        UniProt_GCRP UniProtAcc Q09606
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Mar 2010 11:14:55 WBPerson2970 Name_change: CGC_name: scav-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scav
    Allele (49)
    Strain: WBStrain00032107
    RNASeq_FPKM (74)
    GO_annotation: 00055069
      00055070
      00055071
      00055072
      00055073
      00118366
    Ortholog: WBGene00063176 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025076 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164560 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128499 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096182 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00223420 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3462 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g958 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16094 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6033 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g19167 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17440 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g20845 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20062 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-scav-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13614 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00072.g3359 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01451 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023470 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06657 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10864 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1428 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g17664 Panagrellus redivivus From_analysis: WormBase-Compara
      chrX_pilon.g19801 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248702 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278062 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261379 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293485 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0035090 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0010435 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            SonicParanoid
      FB:FBgn0035091 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            SonicParanoid
      FB:FBgn0027562 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            SonicParanoid
      FB:FBgn0260004 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-020419-29 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-031126-1 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-170406-1 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      HGNC:1664 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      MGI:1196458 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      MGI:893578 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      RGD:2302 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      RGD:621882 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
    Paralog: WBGene00008542 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00008692 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015389 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00013039 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013578 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Is an ortholog of human SCARB1 (scavenger receptor class B member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07B1.3
    Corresponding_transcript: R07B1.3.1
    Other_sequence: CJC00424_1
    Associated_feature: WBsf648430
      WBsf663206
      WBsf1006555
      WBsf236205
      WBsf236206
  Experimental_info: RNAi_result: WBRNAi00017502 Inferred_automatically: RNAi_primary
      WBRNAi00078837 Inferred_automatically: RNAi_primary
      WBRNAi00051412 Inferred_automatically: RNAi_primary
      WBRNAi00034677 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013043
      Expr1155102
      Expr2015618
      Expr2033853
    Drives_construct: WBCnstr00030950
    Construct_product: WBCnstr00030950
    Microarray_results (21)
    Expression_cluster (176)
    Interaction (22)
  Map_info: Map: X Position: 1.72968 Error: 0.000308
    Positive: Positive_clone: R07B1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00010266
    WBPaper00018248
    WBPaper00018249
    WBPaper00038491
    WBPaper00055090
    WBPaper00061821
    WBPaper00065146
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene