WormBase Tree Display for Gene: WBGene00010713
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| WBGene00010713 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | uso-1 | Person_evidence | WBPerson242 | |||||
| Sequence_name | K09B11.9 | ||||||||
| Molecular_name | K09B11.9a | ||||||||
| K09B11.9a.1 | |||||||||
| CE38393 | |||||||||
| K09B11.9b | |||||||||
| CE39750 | |||||||||
| K09B11.9b.1 | |||||||||
| Other_name | CELE_K09B11.9 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | uso-1 | ||||||||
| DB_info | Database | AceView | gene | 4O210 | |||||
| WormQTL | gene | WBGene00010713 | |||||||
| WormFlux | gene | WBGene00010713 | |||||||
| NDB | locus_tag | CELE_K09B11.9 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010713|UniProtKB=G5EGG0 | |||||||
| family | PTHR10013 | ||||||||
| NCBI | gene | 178311 | |||||||
| RefSeq | protein | NM_001047508.3 | |||||||
| NM_001047509.2 | |||||||||
| TREEFAM | TREEFAM_ID | TF106157 | |||||||
| TrEMBL | UniProtAcc | Q2EEM5 | |||||||
| G5EGG0 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EGG0 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Nov 2008 10:21:23 | WBPerson2970 | Name_change | CGC_name | uso-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | uso | ||||||||
| Allele (167) | |||||||||
| Component_of_genotype | WBGenotype00000041 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (33) | |||||||||
| Ortholog (41) | |||||||||
| Structured_description | Concise_description | uso-1 encodes the C. elegans ortholog of the Uso1/p115 vesicle tethering protein that in yeast has been shown to function in endoplasmic reticulum-to-Golgi transport; RNAi screens indicate that uso-1 activity is required for normal fat content and distal tip cell migration. | Paper_evidence | WBPaper00005655 | |||||
| WBPaper00028783 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 04 Nov 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in intracellular protein transport; membrane fusion; and vesicle-mediated transport. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi stack; and endoplasmic reticulum. Is an ortholog of human USO1 (USO1 vesicle transport factor). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Modifies_disease | DOID:12377 | ||||||||
| Modifies_disease_in_annotation | WBDOannot00000878 | ||||||||
| Molecular_info | Corresponding_CDS | K09B11.9a | |||||||
| K09B11.9b | |||||||||
| Corresponding_CDS_history | K09B11.9:wp141 | ||||||||
| Corresponding_transcript | K09B11.9a.1 | ||||||||
| K09B11.9b.1 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf652344 | ||||||||
| WBsf652345 | |||||||||
| WBsf667687 | |||||||||
| WBsf668492 | |||||||||
| WBsf668493 | |||||||||
| WBsf998406 | |||||||||
| WBsf1018530 | |||||||||
| WBsf1018531 | |||||||||
| Experimental_info | RNAi_result (15) | ||||||||
| Expr_pattern | Expr1017142 | ||||||||
| Expr1034688 | |||||||||
| Expr1154081 | |||||||||
| Expr2017933 | |||||||||
| Expr2036069 | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (88) | |||||||||
| Interaction (464) | |||||||||
| Map_info | Map | IV | Position | 9.26696 | Error | 0.011495 | |||
| Positive | Positive_clone | K09B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00031234 | ||||||||
| WBPaper00037843 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040780 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060970 | |||||||||
| WBPaper00061547 | |||||||||
| WBPaper00065044 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
