WormBase Tree Display for Gene: WBGene00010713
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WBGene00010713 | SMap | S_parent | Sequence | CHROMOSOME_IV | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | uso-1 | Person_evidence | WBPerson242 | |||
Sequence_name | K09B11.9 | ||||||
Molecular_name | K09B11.9a | ||||||
K09B11.9a.1 | |||||||
CE38393 | |||||||
K09B11.9b | |||||||
CE39750 | |||||||
K09B11.9b.1 | |||||||
Other_name | CELE_K09B11.9 | Accession_evidence | NDB | BX284604 | |||
Public_name | uso-1 | ||||||
DB_info | Database | AceView | gene | 4O210 | |||
WormQTL | gene | WBGene00010713 | |||||
WormFlux | gene | WBGene00010713 | |||||
NDB | locus_tag | CELE_K09B11.9 | |||||
Panther | gene | CAEEL|WormBase=WBGene00010713|UniProtKB=G5EGG0 | |||||
family | PTHR10013 | ||||||
NCBI | gene | 178311 | |||||
RefSeq | protein | NM_001047508.3 | |||||
NM_001047509.2 | |||||||
TREEFAM | TREEFAM_ID | TF106157 | |||||
TrEMBL | UniProtAcc | Q2EEM5 | |||||
G5EGG0 | |||||||
UniProt_GCRP | UniProtAcc | G5EGG0 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | uso | ||||||
Allele (167) | |||||||
Component_of_genotype | WBGenotype00000041 | ||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (33) | |||||||
Ortholog (41) | |||||||
Structured_description | Concise_description | uso-1 encodes the C. elegans ortholog of the Uso1/p115 vesicle tethering protein that in yeast has been shown to function in endoplasmic reticulum-to-Golgi transport; RNAi screens indicate that uso-1 activity is required for normal fat content and distal tip cell migration. | Paper_evidence | WBPaper00005655 | |||
WBPaper00028783 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 04 Nov 2008 00:00:00 | ||||||
Automated_description | Predicted to be involved in intracellular protein transport; membrane fusion; and vesicle-mediated transport. Predicted to be located in ER to Golgi transport vesicle membrane; Golgi stack; and endoplasmic reticulum. Is an ortholog of human USO1 (USO1 vesicle transport factor). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Modifies_disease | DOID:12377 | ||||||
Modifies_disease_in_annotation | WBDOannot00000878 | ||||||
Molecular_info | Corresponding_CDS | K09B11.9a | |||||
K09B11.9b | |||||||
Corresponding_CDS_history | K09B11.9:wp141 | ||||||
Corresponding_transcript | K09B11.9a.1 | ||||||
K09B11.9b.1 | |||||||
Other_sequence (26) | |||||||
Associated_feature | WBsf652344 | ||||||
WBsf652345 | |||||||
WBsf667687 | |||||||
WBsf668492 | |||||||
WBsf668493 | |||||||
WBsf998406 | |||||||
WBsf1018530 | |||||||
WBsf1018531 | |||||||
Experimental_info | RNAi_result (15) | ||||||
Expr_pattern | Expr1017142 | ||||||
Expr1034688 | |||||||
Expr1154081 | |||||||
Expr2017933 | |||||||
Expr2036069 | |||||||
Microarray_results (22) | |||||||
Expression_cluster (88) | |||||||
Interaction (464) | |||||||
Map_info | Map | IV | Position | 9.26696 | Error | 0.011495 | |
Positive | Positive_clone | K09B11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00031234 | ||||||
WBPaper00037843 | |||||||
WBPaper00038491 | |||||||
WBPaper00040780 | |||||||
WBPaper00055090 | |||||||
WBPaper00060970 | |||||||
WBPaper00061547 | |||||||
WBPaper00065044 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |