WormBase Tree Display for Gene: WBGene00010573
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| WBGene00010573 | SMap | S_parent | Sequence | K04H4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | chtb-1 | Person_evidence | WBPerson1820 | |||||
| Sequence_name | K04H4.2 | ||||||||
| Molecular_name | K04H4.2a | ||||||||
| K04H4.2a.1 | |||||||||
| CE32463 | |||||||||
| K04H4.2b | |||||||||
| CE36653 | |||||||||
| K04H4.2c | |||||||||
| CE47897 | |||||||||
| K04H4.2b.1 | |||||||||
| K04H4.2c.1 | |||||||||
| Other_name | CELE_K04H4.2 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | chtb-1 | ||||||||
| DB_info | Database | AceView | gene | 3K438 | |||||
| WormQTL | gene | WBGene00010573 | |||||||
| WormFlux | gene | WBGene00010573 | |||||||
| NDB | locus_tag | CELE_K04H4.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010573|UniProtKB=P34504 | |||||||
| family | PTHR34150 | ||||||||
| NCBI | gene | 176315 | |||||||
| RefSeq | protein | NM_001379858.1 | |||||||
| NM_001382959.2 | |||||||||
| NM_001382960.1 | |||||||||
| SwissProt | UniProtAcc | P34504 | |||||||
| UniProt_GCRP | UniProtAcc | P34504 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jan 2022 10:41:14 | WBPerson1983 | Name_change | CGC_name | chtb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | chtb | ||||||||
| Allele (95) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00042712 | ||||||||
| 00117926 | |||||||||
| 00117927 | |||||||||
| Contained_in_operon | CEOP3574 | ||||||||
| Ortholog (26) | |||||||||
| Paralog | WBGene00004156 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00008073 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00044016 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021504 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022445 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019839 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00235273 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020421 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | K04H4.2 encodes, by alternative splicing, three proteins ranging from628 to 1446 residues in length; K04H4.2 proteins are predicted to besecreted, with an N-terminal chitin-binding peritrophin-A domainfollowed by up to 15 cysteine-rich domains; the general organization ofK04H4.2 protein resembles that of T10E10.4; in mass RNAi assays, K04H4.2is required for larval growth and locomotion; K04H4.2 transcription isupregulated by hypoxia, in parallel with ketn-1. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006395 | |||||||||
| WBPaper00026596 | |||||||||
| WBPaper00028588 | |||||||||
| WBPaper00029231 | |||||||||
| WBPaper00029232 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 09 Apr 2007 00:00:00 | ||||||||
| Automated_description | Predicted to enable chitin binding activity. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | K04H4.2a | |||||||
| K04H4.2b | |||||||||
| K04H4.2c | |||||||||
| Corresponding_CDS_history | K04H4.2a:wp90 | ||||||||
| K04H4.2b:wp124 | |||||||||
| K04H4.2c:wp168 | |||||||||
| K04H4.2c:wp214 | |||||||||
| Corresponding_transcript | K04H4.2a.1 | ||||||||
| K04H4.2b.1 | |||||||||
| K04H4.2c.1 | |||||||||
| Other_sequence (20) | |||||||||
| Associated_feature (29) | |||||||||
| Experimental_info | RNAi_result (18) | ||||||||
| Expr_pattern | Expr1017946 | ||||||||
| Expr1034618 | |||||||||
| Expr1153654 | |||||||||
| Expr2004779 | |||||||||
| Expr2023002 | |||||||||
| Drives_construct | WBCnstr00031313 | ||||||||
| Construct_product | WBCnstr00031313 | ||||||||
| Microarray_results (45) | |||||||||
| Expression_cluster (315) | |||||||||
| Interaction (135) | |||||||||
| Map_info | Map | III | Position | 0.427112 | |||||
| Positive | Positive_clone | K04H4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028984 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060797 | |||||||||
| WBPaper00064073 | |||||||||
| WBPaper00064648 | |||||||||
| WBPaper00065560 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
