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WormBase Tree Display for Gene: WBGene00010558

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Name Class

WBGene00010558SMapS_parentSequenceK04D7
IdentityVersion3
NameCGC_nameptrg-1Author_evidenceWBPerson555
Sequence_nameK04D7.4
Molecular_nameK04D7.4a
K04D7.4a.1
CE40655
K04D7.4b
CE44709
K04D7.4b.1
Other_nameptp-4Author_evidenceWBPerson555
CELE_K04D7.4Accession_evidenceNDBBX284604
Public_nameptrg-1
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
217 Feb 2012 16:57:01WBPerson2970Name_changeCGC_nameptp-4
310 Jul 2023 23:47:10WBPerson51134Name_changeCGC_nameptrg-1
Other_nameptp-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classptrg
Allele (133)
RNASeq_FPKM (74)
GO_annotation00040478
00040479
00040480
00040481
00040482
00040483
00040484
00040485
00117916
00117917
Ortholog (31)
Paralog (65)
Structured_descriptionAutomated_descriptionPredicted to enable protein tyrosine phosphatase activity. Predicted to be located in membrane.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK04D7.4a
K04D7.4b
Corresponding_CDS_historyK04D7.4:wp169
Corresponding_transcriptK04D7.4a.1
K04D7.4b.1
Other_sequence (11)
Associated_feature (13)
Experimental_infoRNAi_resultWBRNAi00049897Inferred_automaticallyRNAi_primary
WBRNAi00001520Inferred_automaticallyRNAi_primary
WBRNAi00016590Inferred_automaticallyRNAi_primary
Expr_patternExpr1019353
Expr1034608
Expr1153603
Expr2015151
Expr2033389
Drives_constructWBCnstr00031326
Construct_productWBCnstr00031326
Microarray_results (25)
Expression_clusterWBPaper00032425:down_in_rde-4
WBPaper00032425:down_in_zfp-1
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_larva_enriched
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044260:nicotic-acid_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045974:NSM_enriched_totalRNA_RNAseq
WBPaper00045974:NSM_enriched_totalRNA_tiling
WBPaper00046121:ecdoderm_unique
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00046805:csr-1(RNAi)_upregulated_Set2
WBPaper00048988:neuron_enriched
WBPaper00048988:neuron_expressed
WBPaper00049377:MWCNT_upregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_upregulated_24-cell-embryo
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056167:Cry5B_upregulated
WBPaper00056284:ints-11(RNAi)_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00056855:his-72(uge40)_upregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00058969:RIS_depleted
WBPaper00059027:neuron-synapses_depleted
WBPaper00059471:EGL-43_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060634:fhod-1(tm2363)_upregulated
WBPaper00060661:hypoxia_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:ADE
WBPaper00061340:AIM
WBPaper00061340:AIZ
WBPaper00061340:AVE
WBPaper00061340:DA
WBPaper00061340:DD
WBPaper00061340:Excretory_duct_and_pore
WBPaper00061340:Excretory_gland
WBPaper00061340:FLP
WBPaper00061340:F_U
WBPaper00061340:g1A_g1P
WBPaper00061340:g1A_parent
WBPaper00061340:g2
WBPaper00061340:g2_parent
WBPaper00061340:M1_parent
WBPaper00061340:MC
WBPaper00061340:Neuroblast_AIZ_FLP
WBPaper00061340:Neuroblast_AVG_RIR
WBPaper00061340:OLL_parent
WBPaper00061340:Parent_of_exc_duct_pore_DB_1_3
WBPaper00061340:Parent_of_exc_gland_AVK
WBPaper00061340:Parent_of_g1P_I3
WBPaper00061340:Parent_of_K_Kprime
WBPaper00061340:Pharyngeal_neuron
WBPaper00061340:RIC
WBPaper00061340:RIV
WBPaper00061340:RMED
WBPaper00061340:RME_LR_parent
WBPaper00061340:SIB
WBPaper00061340:SMD
WBPaper00061340:URX
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061478:pie-1(ne4433)_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:ldb-1_2877-scd-1_3086
WBPaper00061527:sol-1-jnk-1_18695
WBPaper00061651:AIZ_enriched
WBPaper00061651:M3_enriched
WBPaper00061651:SMD_enriched
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061995:mter-4(syb3662syb3403)_downregulated
WBPaper00062103:neuron_enriched
WBPaper00062156:jmjd-5(zr1234)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065841:10_0
WBPaper00065841:32_0
WBPaper00065841:36_2
WBPaper00065841:39_0
WBPaper00065841:39_1
WBPaper00065841:59_0
WBPaper00065841:63_0
WBPaper00065841:72_0
WBPaper00065841:87_0
WBPaper00065841:93_0
WBPaper00065841:111_0
WBPaper00065841:116_0
WBPaper00065841:119_0
WBPaper00065841:120_0
WBPaper00065841:122_0
WBPaper00065841:124_0
WBPaper00065841:125_0
WBPaper00065841:135_0
WBPaper00065841:140_0
WBPaper00065975:P-body_vs_oocyte_enriched
WBPaper00065975:P-body_vs_WholeAnimal_enriched
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_18
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00030839:Embryo_A_Class
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00032165:differentially_expressed_with_age_medoid_1
WBPaper00035588:alg-1(-)_upregulated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_H
WBPaper00038427:lin-54_embryo_changed
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
WBPaper00042548:miRISC_enriched
WBPaper00045673:colistin_upregulated
WBPaper00046639:tyrosol_upregulated
WBPaper00047070:N2_UV_downregulated
WBPaper00047070:xpa-1_UV_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
Interaction (39)
Map_infoMapIVPosition4.55839
PositivePositive_cloneK04D7Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00060661
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene