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WormBase Tree Display for Gene: WBGene00010552

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Name Class

WBGene00010552SMapS_parentSequenceK04C1
IdentityVersion1
NameSequence_nameK04C1.2
Molecular_nameK04C1.2a
K04C1.2a.1
CE06086
K04C1.2b
CE18848
K04C1.2b.1
Other_nameCELE_K04C1.2Accession_evidenceNDBBX284606
Public_nameK04C1.2
DB_infoDatabaseAceViewgeneXO859
WormQTLgeneWBGene00010552
WormFluxgeneWBGene00010552
NDBlocus_tagCELE_K04C1.2
NCBIgene181532
RefSeqproteinNM_077972.7
NM_077971.8
TREEFAMTREEFAM_IDTF351323
TrEMBLUniProtAccQ21205
Q9XVV7
UniProt_GCRPUniProtAccQ9XVV7
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:51WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (56)
RNASeq_FPKM (74)
OrthologWBGene00060128Caenorhabditis remaneiFrom_analysisOMA
WBGene00023895Caenorhabditis briggsaeFrom_analysisInparanoid_8
Sp34_X0113310Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrX_pilon.g20544Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00125506Caenorhabditis japonicaFrom_analysisWormBase-Compara
ParalogWBGene00004945Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
Structured_descriptionConcise_descriptionK04C1.2 encodes a protein most closely related to the C. elegans SOP-2 Polycomb group protein; the product of K04C1.2 contains, at its C terminus, a region that has similarity to the SAM (sterile alpha motif) domain, an evolutionarily conserved protein-protein interaction domain of approximately 70 amino acids; although the similarity between SOP-2 and K04C1.2 extends through the SAM domain, replacement of the SOP-2 SAM domain with that of K04C1.2 leads to aberrant localization of the chimeric protein, illustrating that the two SAM domains are not functionally conserved.Paper_evidenceWBPaper00006514
Curator_confirmedWBPerson1843
Date_last_updated20 Aug 2008 00:00:00
Automated_descriptionEnriched in several structures, including ABalaaaarl; ABalaaaarr; ABplpaaaap; PVR; and mechanosensory neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by four chemicals including Zidovudine; paraquat; and Chlorpyrifos based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Sterile alpha motif/pointed domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSK04C1.2a
K04C1.2b
Corresponding_transcriptK04C1.2a.1
K04C1.2b.1
Associated_featureWBsf648724
WBsf1007859
WBsf1024372
WBsf236659
WBsf236660
Transcription_factorWBTranscriptionFactor000331
Experimental_infoRNAi_resultWBRNAi00049883Inferred_automaticallyRNAi_primary
WBRNAi00016581Inferred_automaticallyRNAi_primary
Expr_patternExpr1027113
Expr1034604
Expr1153588
Expr2004756
Expr2022980
Drives_constructWBCnstr00031332
Construct_productWBCnstr00031332
Microarray_results (24)
Expression_cluster (88)
InteractionWBInteraction000178623
WBInteraction000185065
WBInteraction000539396
Map_infoPositivePositive_cloneK04C1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX16.6702
ReferenceWBPaper00006514
MethodGene