WormBase Tree Display for Gene: WBGene00010552
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WBGene00010552 | SMap | S_parent | Sequence | K04C1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | K04C1.2 | |||||||
Molecular_name | K04C1.2a | ||||||||
K04C1.2a.1 | |||||||||
CE06086 | |||||||||
K04C1.2b | |||||||||
CE18848 | |||||||||
K04C1.2b.1 | |||||||||
Other_name | CELE_K04C1.2 | Accession_evidence | NDB | BX284606 | |||||
Public_name | K04C1.2 | ||||||||
DB_info | Database | AceView | gene | XO859 | |||||
WormQTL | gene | WBGene00010552 | |||||||
WormFlux | gene | WBGene00010552 | |||||||
NDB | locus_tag | CELE_K04C1.2 | |||||||
NCBI | gene | 181532 | |||||||
RefSeq | protein | NM_077972.7 | |||||||
NM_077971.8 | |||||||||
TREEFAM | TREEFAM_ID | TF351323 | |||||||
TrEMBL | UniProtAcc | Q21205 | |||||||
Q9XVV7 | |||||||||
UniProt_GCRP | UniProtAcc | Q9XVV7 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (56) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog | WBGene00060128 | Caenorhabditis remanei | From_analysis | OMA | |||||
WBGene00023895 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | ||||||
Sp34_X0113310 | Caenorhabditis inopinata | From_analysis | WormBase-Compara | ||||||
chrX_pilon.g20544 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00125506 | Caenorhabditis japonica | From_analysis | WormBase-Compara | ||||||
Paralog | WBGene00004945 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
Structured_description | Concise_description | K04C1.2 encodes a protein most closely related to the C. elegans SOP-2 Polycomb group protein; the product of K04C1.2 contains, at its C terminus, a region that has similarity to the SAM (sterile alpha motif) domain, an evolutionarily conserved protein-protein interaction domain of approximately 70 amino acids; although the similarity between SOP-2 and K04C1.2 extends through the SAM domain, replacement of the SOP-2 SAM domain with that of K04C1.2 leads to aberrant localization of the chimeric protein, illustrating that the two SAM domains are not functionally conserved. | Paper_evidence | WBPaper00006514 | |||||
Curator_confirmed | WBPerson1843 | ||||||||
Date_last_updated | 20 Aug 2008 00:00:00 | ||||||||
Automated_description | Enriched in several structures, including ABalaaaarl; ABalaaaarr; ABplpaaaap; PVR; and mechanosensory neurons based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; sir-2.1; and pgl-1 based on microarray and RNA-seq studies. Is affected by four chemicals including Zidovudine; paraquat; and Chlorpyrifos based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Sterile alpha motif/pointed domain superfamily. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | K04C1.2a | |||||||
K04C1.2b | |||||||||
Corresponding_transcript | K04C1.2a.1 | ||||||||
K04C1.2b.1 | |||||||||
Associated_feature | WBsf648724 | ||||||||
WBsf1007859 | |||||||||
WBsf1024372 | |||||||||
WBsf236659 | |||||||||
WBsf236660 | |||||||||
Transcription_factor | WBTranscriptionFactor000331 | ||||||||
Experimental_info | RNAi_result | WBRNAi00049883 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00016581 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1027113 | ||||||||
Expr1034604 | |||||||||
Expr1153588 | |||||||||
Expr2004756 | |||||||||
Expr2022980 | |||||||||
Drives_construct | WBCnstr00031332 | ||||||||
Construct_product | WBCnstr00031332 | ||||||||
Microarray_results (24) | |||||||||
Expression_cluster (88) | |||||||||
Interaction | WBInteraction000178623 | ||||||||
WBInteraction000185065 | |||||||||
WBInteraction000539396 | |||||||||
Map_info | Positive | Positive_clone | K04C1 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | X | 16.6702 | |||||||
Reference | WBPaper00006514 | ||||||||
Method | Gene |