WormBase Tree Display for Gene: WBGene00010516

WBGene00010516 SMap: S_parent: Sequence: K02E11
  Identity: Version: 1
    Name: Sequence_name: K02E11.7
      Molecular_name: K02E11.7
        K02E11.7.1
        CE37981
      Other_name: CELE_K02E11.7 Accession_evidence: NDB BX284605
      Public_name: K02E11.7
    DB_info: Database: AceView gene 5O734
        WormQTL gene WBGene00010516
        WormFlux gene WBGene00010516
        NDB locus_tag CELE_K02E11.7
        Panther gene CAEEL|WormBase=WBGene00010516|UniProtKB=O62297
          family PTHR35182
        NCBI gene 186898
        RefSeq protein NM_074126.4
        TREEFAM TREEFAM_ID TF319413
        TrEMBL UniProtAcc O62297
        UniProt_GCRP UniProtAcc O62297
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:51 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (21)
    Strain: WBStrain00033251
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00009056 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00010512 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00010513 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00010514 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00010515 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020589 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00015281 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00022230 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00010518 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Enriched in PLM; amphid sheath cell; and hypodermis based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and daf-12 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including Ethanol; methylmercuric chloride; and bisphenol A based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: K02E11.7
    Corresponding_CDS_history: K02E11.7:wp138
    Corresponding_transcript: K02E11.7.1
    Other_sequence: CSC00117_1
      FD517801.1
    Associated_feature: WBsf234922
  Experimental_info: RNAi_result (2)
    Expr_pattern: Expr1020204
      Expr1153437
      Expr2004697
    Drives_construct: WBCnstr00031360
    Construct_product: WBCnstr00031360
    Microarray_results (16)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
      WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00041954:ethanol_upregulated
      WBPaper00044316:CH3HgCl_7.5uM_downregulated
      WBPaper00044578:reduced-humidity_downregulated_microarray
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045774:clk-1_downregulated
      WBPaper00045918:96h_infection_recovery_downregulated
      WBPaper00046012:tdp-1(ok803)_upregulated
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049489:AMsh-glia_enriched
      WBPaper00049954:BPA_downregulated
      WBPaper00050080:rbr-2(tm3141)_upregulated
      WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:mir-34(OverExpression)_vs_N2_regulated_adult_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050801:DAF-12_dauer_regulome
      WBPaper00050801:DAF-16_dauer_regulome
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050990:hypodermis_enriched
      WBPaper00050990:hypodermis_expressed
      WBPaper00051265:F4_hrde-1(tm1200)_upregulated
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051558:fog-2(q71)_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053094:adr-2(ok735)_neuron_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00053810:clk-1(qm30)_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00054872:egl-9(sa307)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin-Psora_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00055648:male-tail_expressed
      WBPaper00055971:nhl-2(ok818)_20C_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056039:efa-6(tm3124)_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056169:rrf-3(pk1426)_upregulated_L2
      WBPaper00056290:mdt-15(mg584)_downregulated
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00056586:kri-1(ok1251)_upregulated
      WBPaper00057265:metaformin_downregulated_OP50
      WBPaper00057265:metaformin_downregulated_OP50-MR
      WBPaper00057347:nhr-14(tm1473)_downreglated
      WBPaper00058711:paraquat_downregulated
      WBPaper00059253:sucrose_downregulated
      WBPaper00059253:sucrose_stearic-acid_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059728:5ug_cholesterol_upregulated
      WBPaper00059728:20ug_cholesterol_upregulated
      WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
      WBPaper00059739:hira-1(gk835598)_downregulated_adult
      WBPaper00059739:hira-1(gk835598)_downregulated_L4
      WBPaper00060100:SiNP_downregulated_mRNA
      WBPaper00060434:pH4.33_vs_pH6.33_downrgulated
      WBPaper00060445:nfki-1(cer1)_downregulated_L4
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061040:eat-2(ad1116)_upregulated
      WBPaper00061081:E.faecalis_downregulated_N2
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061405:S.aureus_downregulated_starvation
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061527:mtd-1-mec-18
      WBPaper00061590:CGP37157_downregulated
      WBPaper00061651:PHsh_enriched
      WBPaper00061699:daf-18(ok480)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00062672:let-418(n3536)_upregulated
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064602:egl-9(sa307)_downregulated
      WBPaper00064769:him-17(me24)_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
      WBPaper00065158:AFD_depleted
      WBPaper00065581:hpk-1(pk1393)_upregulated
      WBPaper00065841:45_0
      WBPaper00065841:79_2
      WBPaper00065993:glp-1(e2141)_upregulated
      cgc4489_group_14
      WBPaper00031184:acrylamide_downregulated
      WBPaper00031252:AIN-2_IP_enriched
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_C
      WBPaper00038304:octr-1_regulated
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00053236:Starvation_regulated_N2
      [cgc6390]:Cluster_A
    Interaction: WBInteraction000362315
      WBInteraction000439575
  Map_info: Positive: Positive_clone: K02E11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 6.21271
  Method: Gene