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WormBase Tree Display for Gene: WBGene00009980

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Name Class

WBGene00009980SMapS_parentSequenceF53F1
IdentityVersion1
NameSequence_nameF53F1.2
Molecular_nameF53F1.2
F53F1.2.1
CE10934
Other_nameCELE_F53F1.2Accession_evidenceNDBBX284605
Public_nameF53F1.2
DB_infoDatabaseAceViewgene5N887
WormQTLgeneWBGene00009980
WormFluxgeneWBGene00009980
NDBlocus_tagCELE_F53F1.2
PanthergeneCAEEL|WormBase=WBGene00009980|UniProtKB=P91997
familyPTHR11732
NCBIgene179821
RefSeqproteinNM_001392640.1
TREEFAMTREEFAM_IDTF315922
TrEMBLUniProtAccP91997
UniProt_GCRPUniProtAccP91997
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (24)
RNASeq_FPKM (74)
GO_annotation00051733
00051734
00051735
00051736
00117508
Contained_in_operonCEOP5388
Ortholog (29)
Paralog (13)
Structured_descriptionAutomated_descriptionPredicted to enable alditol:NADP+ 1-oxidoreductase activity. Predicted to be located in cytosol.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF53F1.2
Corresponding_transcriptF53F1.2.1
Other_sequenceBXC02358_1
FK808700.1
Associated_featureWBsf647455
WBsf661035
WBsf662016
WBsf662017
WBsf232764
WBsf232765
WBsf232766
Experimental_infoRNAi_resultWBRNAi00025588Inferred_automaticallyRNAi_primary
WBRNAi00081657Inferred_automaticallyRNAi_primary
WBRNAi00048133Inferred_automaticallyRNAi_primary
WBRNAi00008835Inferred_automaticallyRNAi_primary
WBRNAi00032695Inferred_automaticallyRNAi_primary
WBRNAi00048132Inferred_automaticallyRNAi_primary
WBRNAi00092619Inferred_automaticallyRNAi_primary
Expr_patternExpr1013149
Expr1034350
Expr1151941
Expr2004064
Expr2022288
Drives_constructWBCnstr00031768
Construct_productWBCnstr00031768
Microarray_results (19)
Expression_clusterWBPaper00032528:L3_enriched
WBPaper00037047:insoluble_protein
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:hypodermis_larva_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038289:oocyte_protein
WBPaper00040755:LRRK2(R1441C)-Tau_vs_N2_upregulated
WBPaper00040755:LRRK2(wt)-Tau_vs_N2_upregulated
WBPaper00042194:nhr-114(RNAi)_upregulated
WBPaper00044128:daf-2(e1370)_downregulated
WBPaper00044128:DietaryRestriction_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
WBPaper00050344:PLM-neuron_enriched
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:body-wall-muscle_nucleus_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:epidermis_nucleus_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_nucleus_expressed
WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053792:Ochrobactrum_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:sod-2(ok1030)_upregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056868:P.aeruginosa_upregulated_smallRNA
WBPaper00058691:WDR-5.1_interacting_protein
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058948:PA14_upregulated
WBPaper00059253:sucrose_stearic-acid_upregulated
WBPaper00059253:sucrose_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059895:wounding_downregulated
WBPaper00059987:Wounding_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060871:M.humicola-extract_4h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061274:microgravity_upregulated
WBPaper00061340:G2_and_W_blasts
WBPaper00061340:hyp4_hyp5_hyp6
WBPaper00061340:hyp7_AB_lineage
WBPaper00061340:K_Kprime
WBPaper00061340:P_cell
WBPaper00061340:Y
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061527:cyn-10_19153-K12H4.2
WBPaper00061530:nhr-49(e2144)_downregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00064735:bet-1(RNAi)_vs_N2_upregulated
WBPaper00064735:bet-1(uth41)_vs_N2_upregulated
WBPaper00064992:Capsaicin_downregulated
WBPaper00064992:Eugenol_downregulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_downregulated
cgc4489_group_7
WBPaper00025032:cluster_40
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026629:L2_male_enriched
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_6
WBPaper00034739:N2lessDR1350
WBPaper00035479:daf-16(RNAi)_upregulated
WBPaper00036123:Atrazine_regulated
WBPaper00037695:WC_5-day
WBPaper00038060:SUMO-1_upregulated
WBPaper00040184:hcf-1nc_sir-2.1up_daf-2nc
WBPaper00040963:TA200_down
WBPaper00040963:TA300_down
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
InteractionWBInteraction000039818
WBInteraction000039819
WBInteraction000039820
WBInteraction000039821
WBInteraction000039822
WBInteraction000039823
WBInteraction000041969
WBInteraction000048147
WBInteraction000140707
WBInteraction000143328
WBInteraction000143390
WBInteraction000230871
WBInteraction000241611
WBInteraction000248541
WBInteraction000251676
WBInteraction000257310
WBInteraction000257770
WBInteraction000259778
WBInteraction000280593
WBInteraction000291477
WBInteraction000298704
WBInteraction000302245
WBInteraction000311014
WBInteraction000316155
WBInteraction000326806
WBInteraction000333918
WBInteraction000340534
WBInteraction000343920
WBInteraction000345652
WBInteraction000346813
WBInteraction000347118
WBInteraction000349885
WBInteraction000360642
WBInteraction000361118
WBInteraction000365256
WBInteraction000366457
WBInteraction000371217
WBInteraction000373662
WBInteraction000385762
WBInteraction000397905
WBInteraction000404467
WBInteraction000404990
WBInteraction000413161
WBInteraction000417909
WBInteraction000422736
WBInteraction000427667
WBInteraction000428215
WBInteraction000430082
WBInteraction000436719
WBInteraction000438285
WBInteraction000442244
WBInteraction000448852
WBInteraction000520270
WBInteraction000563863
WBInteraction000564993
WBInteraction000573687
WBInteraction000577899
WBInteraction000585125
WBInteraction000586516
Map_infoPositivePositive_cloneF53F1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionV5.25771
ReferenceWBPaper00038491
WBPaper00055090
MethodGene