WormBase Tree Display for Gene: WBGene00009980

WBGene00009980 SMap: S_parent: Sequence: F53F1
  Identity: Version: 1
    Name: Sequence_name: F53F1.2
      Molecular_name: F53F1.2
        F53F1.2.1
        CE10934
      Other_name: CELE_F53F1.2 Accession_evidence: NDB BX284605
      Public_name: F53F1.2
    DB_info: Database: AceView gene 5N887
        WormQTL gene WBGene00009980
        WormFlux gene WBGene00009980
        NDB locus_tag CELE_F53F1.2
        Panther gene CAEEL|WormBase=WBGene00009980|UniProtKB=P91997
          family PTHR11732
        NCBI gene 179821
        RefSeq protein NM_001392640.1
        TREEFAM TREEFAM_ID TF315922
        TrEMBL UniProtAcc P91997
        UniProt_GCRP UniProtAcc P91997
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (24)
    RNASeq_FPKM (74)
    GO_annotation: 00051733
      00051734
      00051735
      00051736
      00117508
    Contained_in_operon: CEOP5388
    Ortholog (29)
    Paralog (13)
    Structured_description: Automated_description: Predicted to enable alditol:NADP+ 1-oxidoreductase activity. Predicted to be located in cytosol. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53F1.2
    Corresponding_transcript: F53F1.2.1
    Other_sequence: BXC02358_1
      FK808700.1
    Associated_feature: WBsf647455
      WBsf661035
      WBsf662016
      WBsf662017
      WBsf232764
      WBsf232765
      WBsf232766
  Experimental_info: RNAi_result: WBRNAi00025588 Inferred_automatically: RNAi_primary
      WBRNAi00081657 Inferred_automatically: RNAi_primary
      WBRNAi00048133 Inferred_automatically: RNAi_primary
      WBRNAi00008835 Inferred_automatically: RNAi_primary
      WBRNAi00032695 Inferred_automatically: RNAi_primary
      WBRNAi00048132 Inferred_automatically: RNAi_primary
      WBRNAi00092619 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013149
      Expr1034350
      Expr1151941
      Expr2004064
      Expr2022288
    Drives_construct: WBCnstr00031768
    Construct_product: WBCnstr00031768
    Microarray_results (19)
    Expression_cluster: WBPaper00032528:L3_enriched
      WBPaper00037047:insoluble_protein
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:BAG-neuron_blastula-embryo_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:hypodermis_larva_SelectivelyEnriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00040755:LRRK2(R1441C)-Tau_vs_N2_upregulated
      WBPaper00040755:LRRK2(wt)-Tau_vs_N2_upregulated
      WBPaper00042194:nhr-114(RNAi)_upregulated
      WBPaper00044128:daf-2(e1370)_downregulated
      WBPaper00044128:DietaryRestriction_downregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:oscillating_dev_expression
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_downregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00048988:neuron_expressed
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049368:daf-2(e1370)_downregulated
      WBPaper00049498:npr-1(ur89)_regulated_6
      WBPaper00049920:Glucose-Diet_upregulated_hyl-2(tm2031)
      WBPaper00050193:met-2(n4256)set-25(n5021)_downregulated_L1
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:body-wall-muscle_cytoplasm_expressed
      WBPaper00051245:body-wall-muscle_nucleus_expressed
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00051245:epidermis_nucleus_expressed
      WBPaper00051245:intestine_cytoplasm_expressed
      WBPaper00051245:intestine_nucleus_expressed
      WBPaper00051245:pharyngeal-muscle_cytoplasm_expressed
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053792:Ochrobactrum_downregulated
      WBPaper00053810:daf-2(e1370)_downregulated
      WBPaper00053810:sod-2(ok1030)_upregulated
      WBPaper00055103:thoc-5(wy822)_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_downregulated_N2
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00058691:WDR-5.1_interacting_protein
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058948:PA14_upregulated
      WBPaper00059253:sucrose_stearic-acid_upregulated
      WBPaper00059253:sucrose_upregulated
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059895:wounding_downregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060084:cco-1(RNAi)_downregulated_N2
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061274:microgravity_upregulated
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061340:hyp4_hyp5_hyp6
      WBPaper00061340:hyp7_AB_lineage
      WBPaper00061340:K_Kprime
      WBPaper00061340:P_cell
      WBPaper00061340:Y
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061527:cyn-10_19153-K12H4.2
      WBPaper00061530:nhr-49(e2144)_downregulated
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00064735:bet-1(RNAi)_vs_N2_upregulated
      WBPaper00064735:bet-1(uth41)_vs_N2_upregulated
      WBPaper00064992:Capsaicin_downregulated
      WBPaper00064992:Eugenol_downregulated
      WBPaper00065096:25C_vs_20C_upregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00066062:xrep-4(lax137)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      cgc4489_group_7
      WBPaper00025032:cluster_40
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026629:L2_male_enriched
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_6
      WBPaper00034739:N2lessDR1350
      WBPaper00035479:daf-16(RNAi)_upregulated
      WBPaper00036123:Atrazine_regulated
      WBPaper00037695:WC_5-day
      WBPaper00038060:SUMO-1_upregulated
      WBPaper00040184:hcf-1nc_sir-2.1up_daf-2nc
      WBPaper00040963:TA200_down
      WBPaper00040963:TA300_down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00047070:N2_UV_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction (59)
  Map_info: Positive: Positive_clone: F53F1 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: V 5.25771
  Reference: WBPaper00038491
    WBPaper00055090
  Method: Gene