WormBase Tree Display for Gene: WBGene00009962

WBGene00009962 SMap: S_parent: Sequence: F53B6
  Identity: Version: 1
    Name: Sequence_name: F53B6.7
      Molecular_name: F53B6.7
        F53B6.7.1
        CE32430
      Other_name: CELE_F53B6.7 Accession_evidence: NDB BX284601
      Public_name: F53B6.7
    DB_info: Database: AceView gene 1J529
        WormQTL gene WBGene00009962
        WormFlux gene WBGene00009962
        NDB locus_tag CELE_F53B6.7
        Panther gene CAEEL|WormBase=WBGene00009962|UniProtKB=Q9XVN0
          family PTHR16469
        NCBI gene 172710
        RefSeq protein NM_060008.6
        TREEFAM TREEFAM_ID TF313334
        TrEMBL UniProtAcc Q9XVN0
        UniProt_GCRP UniProtAcc Q9XVN0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:50 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (38)
    RNASeq_FPKM (74)
    Ortholog (28)
    Paralog: WBGene00008259 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00010082 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00017279 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00020321 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: F53B6.7 encodes a member of the histidine phosphatase superfamilyorthologous to Bombyx mori ecdysteroid phosphate phosphatase (EPP),human STS1 (OMIM:609201) and human UBASH3A (OMIM:605736); F53B6.7 lacksthe consensus sequence for phosphatase activity, and thus is predictedto be catalytically inactive; F53B6.7 is paralogous to C. elegansC52E4.7, F09C12.8, F55A11.11, and T07F12.1; loss of F53B6.7 activity vialarge-scale RNAi results in no obvious defects. Paper_evidence: WBPaper00029177
          Curator_confirmed: WBPerson1843
            WBPerson567
          Date_last_updated: 04 Apr 2007 00:00:00
      Automated_description: Enriched in OLL; PVD; germ line; and in male based on proteomic; microarray; and RNA-seq studies. Is affected by several genes including daf-2; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by seventeen chemicals including Ethanol; methylmercuric chloride; and manganese chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Histidine phosphatase superfamily; Histidine phosphatase superfamily (branch 1); and Histidine phosphatase superfamily, clade-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F53B6.7
    Corresponding_CDS_history: F53B6.7:wp90
    Corresponding_transcript: F53B6.7.1
    Other_sequence: CR08391
      CRC02504_1
    Associated_feature: WBsf984545
      WBsf1010296
      WBsf1010297
      WBsf218232
  Experimental_info: RNAi_result: WBRNAi00070654 Inferred_automatically: RNAi_primary
      WBRNAi00003748 Inferred_automatically: RNAi_primary
      WBRNAi00048092 Inferred_automatically: RNAi_primary
      WBRNAi00070655 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1025668
      Expr1151902
      Expr2004042
      Expr2022266
    Drives_construct: WBCnstr00031783
    Construct_product: WBCnstr00031783
    Microarray_results (18)
    Expression_cluster (127)
    Interaction (56)
  Map_info: Positive: Positive_clone: F53B6 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 3.33049
  Reference: WBPaper00028498
    WBPaper00055090
  Method: Gene