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WormBase Tree Display for Gene: WBGene00009902

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Name Class

WBGene00009902SMapS_parentSequenceF49E12
IdentityVersion2
NameCGC_namedrd-1Person_evidenceWBPerson10050
Sequence_nameF49E12.9
Molecular_nameF49E12.9a
F49E12.9a.1
CE03385
F49E12.9b
CE40961
F49E12.9b.1
F49E12.9c
Other_nameCELE_F49E12.9Accession_evidenceNDBBX284602
Public_namedrd-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
229 Apr 2015 12:07:40WBPerson2970Name_changeCGC_namedrd-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdrd
Allele (25)
Strain (2)
RNASeq_FPKM (74)
GO_annotation00004671
00004672
00004673
00004674
00117458
00117459
00117460
Ortholog (32)
ParalogWBGene00009903Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00018036Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable C-4 methylsterol oxidase activity. Predicted to be involved in sterol biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Is an ortholog of human FAXDC2 (fatty acid hydroxylase domain containing 2).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49E12.9a
F49E12.9b
Corresponding_transcriptF49E12.9c
F49E12.9a.1
F49E12.9b.1
Other_sequence (18)
Associated_featureWBsf644461
WBsf717731
WBsf988720
WBsf221736
WBsf221737
Experimental_infoRNAi_resultWBRNAi00090585Inferred_automaticallyRNAi_primary
WBRNAi00032543Inferred_automaticallyRNAi_primary
WBRNAi00092590Inferred_automaticallyRNAi_primary
WBRNAi00015324Inferred_automaticallyRNAi_primary
WBRNAi00047858Inferred_automaticallyRNAi_primary
Expr_patternExpr6126
Expr1029194
Expr1151691
Expr2011084
Expr2029320
Drives_constructWBCnstr00002668
WBCnstr00031829
Construct_productWBCnstr00031829
Microarray_results (26)
Expression_clusterWBPaper00032425:down_in_rde-4
WBPaper00033065:clk-1(qm30)_upregulated
WBPaper00036738:4uM_Heme_downregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038168:lin-35_downregulated
WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00043945:MeHg_upregulated
WBPaper00044260:1-methylnicotinamide_upregulated
WBPaper00044316:HgCl2_7.5uM_upregulated
WBPaper00044426:rotenone_5day_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044557:DietaryRestriction_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045017:blmp-1(tm548)_downregulated
WBPaper00045380:cep-1(gk138)_upregulated_normal
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046741:Garlic-Extract_upregulated_mRNA
WBPaper00048971:daf-16(mgDf50)_upregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049217:TCER-1_upregulated
WBPaper00049334:CE_intestine_enriched
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
WBPaper00049920:Glucose-Diet_downregulated_N2
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:HeatShock_upregulated_hsf-1(+)
WBPaper00049954:BPA_downregulated
WBPaper00050344:AFD-neuron_enriched
WBPaper00050412:cco-1(RNAi)_downregulated_N2
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_adult_25C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050561:indole_10-fold_upregulated
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051039:intestine_enriched
WBPaper00051265:F4_hrde-1(tm1200)_upregulated
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051404:alg-1(gk214)_downregulated
WBPaper00051404:alg-2(ok304)_downregulated
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053606:elt-2(ca15)_vs_elt-2(ca15);elt-7(tm840)_doenregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00053810:nuo-6(qm200)_downregulated
WBPaper00053814:25C_upregulated_PY79
WBPaper00054192:cold-shock_downregulated
WBPaper00054872:egl-9(sa307)_downregulated
WBPaper00055013:spt-16(RNAi)_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055482:Tunicamycin_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055827:daf-2(e1370)_downregulated
WBPaper00055827:pfd-6(gk493446)_upregulated
WBPaper00055941:atfs-1(et15)_downregulated
WBPaper00055941:nuo-6(qm200)_downregulated
WBPaper00056039:efa-6(tm3124)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_downregulated_N2
WBPaper00056167:Cry5B_upregulated
WBPaper00056218:daf-16(mu86)_downregulated_Day7
WBPaper00056275:P.aeruginosa_downregulated
WBPaper00056284:ints-2(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056290:mdt-15(mg584)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057068:Cadmium_downregulated
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00057136:yap-1(ys38)_upregulated
WBPaper00057265:metaformin_upregulated_OP50
WBPaper00058711:wdr-5(ok1417)_downregulated
WBPaper00059117:B.subtilis_downregulated
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059373:stt-3(RNAi)_downregulated
WBPaper00059426:Ag-nanoparticles_upregulated
WBPaper00059527:lsm-1_upregulated_L1
WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00059839:S.maltophilia_regulated
WBPaper00059895:wounding_downregulated
WBPaper00059987:Wounding_downregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_enriched
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060871:M.humicola-extract_4h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB115_downregulated
WBPaper00061007:M.braciatum_downregulated
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061081:E.faecalis_downregulated_skpo-1(ok1640)
WBPaper00061340:ASG_AWA
WBPaper00061340:hyp7_AB_lineage
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061405:S.aureus_upregulated_starvation
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:R10H10.3-T21H3.1
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061653:alh-4(hj221)_upregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00061952:daf-18(nr2037)_upregulated
WBPaper00061952:daf-18(yh1)_upregulated
WBPaper00061995:mter-4(syb3662syb3403)_upregulated
WBPaper00062184:PA14_downregulated
WBPaper00062193:daf-16(RNAi)_upregulated
WBPaper00062193:hsf-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062347:blmp-1(tm548)_downregulated
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062440:crh-1(syb385)_upregulated
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064539:nhr-114(gk849)_downregulated
WBPaper00064661:lpd-3(ok2138)_downregulated
WBPaper00064769:him-17(me24)_upregulated
WBPaper00065029:cadmium_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day10_25C
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_25C
WBPaper00065158:25C_vs_15C_downregulated_AFD
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065199:Transgeneration-starvation_regulated_starved
WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
WBPaper00065392:Lb.delbrueckii_downregulated
WBPaper00065392:Lb.gasseri_downregulated
WBPaper00065392:Lb.rhamnosus_downregulated
WBPaper00065581:hpk-1(pk1393)_downregulated
WBPaper00065749:Heat-Shock-With-Recovery_downregulated_N2
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-L1-treatment_upregulated_Day1
WBPaper00065877:rege-1(imm070)_upregulated_PA14
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00065993:mxl-2(RNAi)-neuron_upregulated
WBPaper00065995:M.humicola-extract_upregulated_N2
WBPaper00066038:mip-1(how5)_downregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_3
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031703:heme_responsive_4
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_6
WBPaper00032948:FedUp
WBPaper00034661:AgNPs_downregulated
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_C
WBPaper00037113:CPF_16C_up-regulated
WBPaper00038172:crh-1null_down_regulated
WBPaper00038172:tax-6null_down_regulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00038462:aging_downregulated
WBPaper00039851:Live_C_albicans_vs_HK_OP50
WBPaper00040184:hcf-1down_sir-2.1down_daf-2down
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:Q50_up
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00040963:TA300_up
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00040985:AIN-2_L4_intestine
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042236:flcn-1(ok975)_upregulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00044091:Bpseudomallei_repressed_4h
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00049311:AgNO3_regulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053550:daf-19(m86)_downregulated_AdultDay2
WBPaper00055899:2,4-Dinitroanisole_regulated
WBPaper00055899:nitroguanidine_regulated
WBPaper00057098:SiO2-nanoparticles_downregulated
Interaction (39)
Map_infoMapIIPosition0.768222
PositivePositive_cloneF49E12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042257
WBPaper00044557
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene