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WormBase Tree Display for Gene: WBGene00009886

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Name Class

WBGene00009886SMapS_parentSequenceF49E2
IdentityVersion1
NameSequence_nameF49E2.2
Molecular_nameF49E2.2a
F49E2.2a.1
CE31527
F49E2.2c
CE23752
F49E2.2a.2
F49E2.2a.3
F49E2.2a.4
F49E2.2c.1
Other_nameCELE_F49E2.2Accession_evidenceNDBBX284606
Public_nameF49E2.2
DB_infoDatabaseAceViewgeneXK191
WormQTLgeneWBGene00009886
SignaLinkproteinWBGene00009886
WormFluxgeneWBGene00009886
NDBlocus_tagCELE_F49E2.2
NCBIgene181177
RefSeqproteinNM_001392825.1
NM_001129675.5
TrEMBLUniProtAccQ20621
A6ZJ46
UniProt_GCRPUniProtAccA6ZJ46
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (118)
RNASeq_FPKM (74)
Ortholog (23)
Structured_descriptionAutomated_descriptionEnriched in several structures, including gonad; mechanosensory neurons; rectal epithelial cell; rectum; and somatic gonad precursor based on microarray; tiling array; RNA-seq; proteomic; and single-cell RNA-seq studies. Is affected by several genes including skn-1; glp-1; and dpy-10 based on RNA-seq; proteomic; and microarray studies. Is affected by thirteen chemicals including stavudine; Zidovudine; and Psoralens based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: SH3 domain; Phosphorylation site; and SH3-like domain superfamily.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF49E2.2a
F49E2.2c
Corresponding_CDS_historyF49E2.2:wp83
F49E2.2b:wp271
Corresponding_transcriptF49E2.2a.1
F49E2.2a.2
F49E2.2a.3
F49E2.2a.4
F49E2.2c.1
Other_sequenceES409587.1
CR03260
HBC02261_1
Hbac_isotig04025
CRC06179_1
Acan_isotig08913
Dviv_isotig25164
Oden_contig24378
CJC06859_1
CRC09473_1
Associated_featureWBsf663180
WBsf663181
WBsf1006475
WBsf1006476
WBsf236179
WBsf236180
WBsf236181
WBsf236182
Experimental_infoRNAi_resultWBRNAi00015326Inferred_automaticallyRNAi_primary
WBRNAi00047862Inferred_automaticallyRNAi_primary
WBRNAi00032545Inferred_automaticallyRNAi_primary
WBRNAi00015327Inferred_automaticallyRNAi_primary
Expr_patternExpr1011257
Expr1034311
Expr1151693
Expr2003942
Expr2022164
Drives_constructWBCnstr00031843
Construct_productWBCnstr00031843
Microarray_results (29)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032528:L3_enriched
WBPaper00032976:dosage_compensated_genes
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:BAG-neuron_blastula-embryo_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:intestine_CoreEnriched
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_embryo_SelectivelyEnriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:intestine_larva_SelectivelyEnriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040990:PA14_upregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00045521:Spermatogenic
WBPaper00045571:germline-ablation_upregulated
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:hermaphrodite-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050015:ifg-1(RNAi)_upregulated
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050698:DEP-1_interacting
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:seam_expressed
WBPaper00051245:cytoplasm_specific
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00051245:intestine_specific
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056284:ints-4(RNAi)_downregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059605:MUT-16_interacting
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:Rectal_cell
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:kin-16-C16E9.1
WBPaper00061527:mup-2-unc-87_284
WBPaper00061651:Gonadal_sheath_cell_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:etr-1(lq61)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064716:paraquat_downregulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065841:3_4
WBPaper00065841:7_0
WBPaper00065841:7_1
WBPaper00065841:7_2
WBPaper00065841:7_4
WBPaper00065841:11_0
WBPaper00065841:11_2
WBPaper00065841:18_0
WBPaper00065841:31_0
WBPaper00065841:43_0
WBPaper00065841:102_0
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066085:sin-3(syb2172)_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
cgc4386_cluster_1_5
cgc4489_group_3
cgc4489_group_19
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025032:cluster_18
WBPaper00025141:N2_Expressed_Genes
WBPaper00026980:intestine_enriched
WBPaper00031003:hlh_1_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035873:dpy-10_regulated
WBPaper00038427:lin-54_embryo_changed
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040963:Q100_down
WBPaper00040963:TA100_up
WBPaper00040963:TA200_up
WBPaper00040963:TA300_up
WBPaper00040985:AIN-2_asynchronous_intestine
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HF_11d_0.2mM_Up
WBPaper00041002:HQ_3d_0.2mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:Starvation_regulated_GR1307
[cgc6390]:Cluster_B
Interaction (39)
Map_info (2)
MethodGene