WormBase Tree Display for Gene: WBGene00009844
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| WBGene00009844 | SMap | S_parent | Sequence | F48C11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cwp-5 | Person_evidence | WBPerson1375 | |||||
| Sequence_name | F48C11.2 | ||||||||
| Molecular_name | F48C11.2a | ||||||||
| F48C11.2a.1 | |||||||||
| CE53348 | |||||||||
| F48C11.2b | |||||||||
| CE53437 | |||||||||
| F48C11.2b.1 | |||||||||
| Other_name | CELE_F48C11.2 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | cwp-5 | ||||||||
| DB_info | Database | AceView | gene | XN800 | |||||
| WormQTL | gene | WBGene00009844 | |||||||
| WormFlux | gene | WBGene00009844 | |||||||
| NDB | locus_tag | CELE_F48C11.2 | |||||||
| NCBI | gene | 185977 | |||||||
| RefSeq | protein | NM_001373548.2 | |||||||
| NM_001373549.3 | |||||||||
| TrEMBL | UniProtAcc | B6VQ87 | |||||||
| B6VQ88 | |||||||||
| UniProt_GCRP | UniProtAcc | B6VQ87 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 18 Jul 2006 14:35:12 | WBPerson2970 | Name_change | CGC_name | cwp-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cwp | ||||||||
| Allele (121) | |||||||||
| Strain | WBStrain00035428 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00006364 | ||||||||
| 00006365 | |||||||||
| 00006366 | |||||||||
| 00006367 | |||||||||
| 00006368 | |||||||||
| 00006369 | |||||||||
| 00006370 | |||||||||
| 00006371 | |||||||||
| 00006372 | |||||||||
| Ortholog (29) | |||||||||
| Structured_description | Concise_description | cwp-5 encodes a novel, single-pass Type I transmembrane protein; CWP-5 is required for the response step of male mating behavior, acting in the same pathway as the polycystin complex members, LOV-1 and PKD-2; specifically, CWP-5 appears to function to negatively regulate latent, obstructive signaling by LOV-1 or PKD-2; CWP-5 is expressed in 21 male-specific sensory neurons, where it localizes to cilia, dendrites, and the cell soma; CWP-5 localization to cilia and dendrites depends upon LOV-1 activity. | Paper_evidence | WBPaper00036024 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 15 Mar 2010 00:00:00 | ||||||||
| Automated_description | Involved in neuronal signal transduction and response to hermaphrodite contact. Located in cell body; dendrite; and non-motile cilium. Expressed in CEM; HOB; and ray neuron type B. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F48C11.2a | |||||||
| F48C11.2b | |||||||||
| Corresponding_CDS_history | F48C11.2:wp196 | ||||||||
| F48C11.2a:wp271 | |||||||||
| F48C11.2b:wp271 | |||||||||
| Corresponding_transcript | F48C11.2a.1 | ||||||||
| F48C11.2b.1 | |||||||||
| Associated_feature | WBsf671181 | ||||||||
| WBsf1007546 | |||||||||
| WBsf1007547 | |||||||||
| WBsf1007548 | |||||||||
| WBsf1007549 | |||||||||
| WBsf1007550 | |||||||||
| WBsf1024194 | |||||||||
| WBsf1024195 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082850 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00015239 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047733 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8949 | ||||||||
| Expr1026331 | |||||||||
| Expr1151566 | |||||||||
| Expr2010643 | |||||||||
| Expr2028883 | |||||||||
| Drives_construct | WBCnstr00013634 | ||||||||
| WBCnstr00019903 | |||||||||
| WBCnstr00031877 | |||||||||
| Construct_product | WBCnstr00019903 | ||||||||
| WBCnstr00031877 | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (48) | |||||||||
| Interaction | WBInteraction000449885 | ||||||||
| WBInteraction000504327 | |||||||||
| WBProcess | WBbiopr:00000012 | ||||||||
| Map_info | Map | X | Position | 10.2237 | Error | 0.001591 | |||
| Positive | Positive_clone | F48C11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036024 | ||||||||
| WBPaper00037377 | |||||||||
| WBPaper00039409 | |||||||||
| WBPaper00057988 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
