WormBase Tree Display for Gene: WBGene00009731
expand all nodes | collapse all nodes | view schema
WBGene00009731 | SMap | S_parent | Sequence | F45G2 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | exo | ||||||
Allele (45) | |||||||
Strain | WBStrain00034463 | ||||||
WBStrain00028633 | |||||||
WBStrain00047360 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (26) | |||||||
Contained_in_operon | CEOP3788 | ||||||
Ortholog (41) | |||||||
Paralog | WBGene00000794 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
WBGene00019004 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020442 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
Structured_description | Concise_description | exo-1 encodes a 5'-3' exonuclease; by homology, EXO-1 is predicted to play a role in DNA metabolic processes, including recombination, double-strand break repair and DNA mismatch repair. | Paper_evidence | WBPaper00037751 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 13 Apr 2011 00:00:00 | ||||||
Automated_description | Predicted to enable 5'-3' DNA exonuclease activity and 5'-flap endonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to be located in nucleus. Is an ortholog of human EXO1 (exonuclease 1). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | F45G2.3 | |||||
Corresponding_CDS_history | F45G2.3:wp58 | ||||||
Corresponding_transcript | F45G2.3.1 | ||||||
Other_sequence (14) | |||||||
Associated_feature | WBsf645714 | ||||||
WBsf994888 | |||||||
WBsf226007 | |||||||
Experimental_info | RNAi_result | WBRNAi00006004 | Inferred_automatically | RNAi_primary | |||
WBRNAi00007873 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00047436 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00015041 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00097145 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr1023799 | ||||||
Expr1034257 | |||||||
Expr1151277 | |||||||
Expr2011396 | |||||||
Expr2029632 | |||||||
Drives_construct | WBCnstr00031959 | ||||||
Construct_product | WBCnstr00031959 | ||||||
Microarray_results (21) | |||||||
Expression_cluster (126) | |||||||
Interaction (109) | |||||||
Map_info | Map | III | Position | 21.2134 | Error | 6.3e-05 | |
Positive | Positive_clone | F45G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (14) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |