WormBase Tree Display for Gene: WBGene00009731
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| WBGene00009731 | SMap | S_parent | Sequence | F45G2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | exo-1 | Person_evidence | WBPerson8161 | |||||
| Sequence_name | F45G2.3 | ||||||||
| Molecular_name | F45G2.3 | ||||||||
| F45G2.3.1 | |||||||||
| CE28728 | |||||||||
| Other_name | CELE_F45G2.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | exo-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:50 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 23 Mar 2009 10:34:01 | WBPerson9133 | Name_change | CGC_name | exo-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | exo | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00034463 | ||||||||
| WBStrain00028633 | |||||||||
| WBStrain00047360 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (26) | |||||||||
| Contained_in_operon | CEOP3788 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000794 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00019004 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020442 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | exo-1 encodes a 5'-3' exonuclease; by homology, EXO-1 is predicted to play a role in DNA metabolic processes, including recombination, double-strand break repair and DNA mismatch repair. | Paper_evidence | WBPaper00037751 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Apr 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable 5'-3' DNA exonuclease activity and 5'-flap endonuclease activity. Predicted to be involved in DNA recombination and mismatch repair. Predicted to be located in nucleus. Is an ortholog of human EXO1 (exonuclease 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F45G2.3 | |||||||
| Corresponding_CDS_history | F45G2.3:wp58 | ||||||||
| Corresponding_transcript | F45G2.3.1 | ||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf645714 | ||||||||
| WBsf994888 | |||||||||
| WBsf226007 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00006004 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00007873 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00047436 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00015041 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00097145 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1023799 | ||||||||
| Expr1034257 | |||||||||
| Expr1151277 | |||||||||
| Expr2011396 | |||||||||
| Expr2029632 | |||||||||
| Drives_construct | WBCnstr00031959 | ||||||||
| Construct_product | WBCnstr00031959 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (126) | |||||||||
| Interaction (109) | |||||||||
| Map_info | Map | III | Position | 21.2134 | Error | 6.3e-05 | |||
| Positive | Positive_clone | F45G2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034413 | ||||||||
| WBPaper00036708 | |||||||||
| WBPaper00037751 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00042018 | |||||||||
| WBPaper00042392 | |||||||||
| WBPaper00043790 | |||||||||
| WBPaper00051412 | |||||||||
| WBPaper00053104 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057769 | |||||||||
| WBPaper00058681 | |||||||||
| WBPaper00061557 | |||||||||
| WBPaper00064526 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
