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WormBase Tree Display for Gene: WBGene00009578

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Name Class

WBGene00009578SMapS_parentSequenceF40F8
IdentityVersion2
NameSequence_nameF40F8.5
Molecular_name (30)
Other_nameCELE_F40F8.5Accession_evidenceNDBBX284602
Public_nameF40F8.5
DB_infoDatabaseAceViewgene2L424
WormQTLgeneWBGene00009578
WormFluxgeneWBGene00009578
NDBlocus_tagCELE_F40F8.5
NCBIgene174702
RefSeqproteinNM_001267353.5
NM_001267356.5
NM_001267358.5
NM_001267355.3
NM_001267354.5
NM_001267360.3
NM_001267357.3
NM_001267351.5
NM_001267359.3
NM_001267352.5
TREEFAMTREEFAM_IDTF316606
TrEMBLUniProtAccH2L299
H2L2A3
H2L2A1
H2L296
H2L2A4
H2L2A2
H2L2A5
H2L2A6
H2L298
H2L2A0
UniProt_GCRPUniProtAccH2L2A2
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
218 Jul 2006 09:56:25WBPerson1983EventSplit_intoWBGene00044916
Split_intoWBGene00044916
StatusLive
Gene_infoBiotypeSO:0001217
Allele (37)
RNASeq_FPKM (74)
Ortholog (24)
Structured_descriptionAutomated_descriptionEnriched in distal tip cell; head mesodermal cell; intestine; muscle cell; and neurons based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; tiling array; RNA-seq; and proteomic studies. Is affected by thirteen chemicals including methylmercury hydroxide; rotenone; and D-glucopyranose based on RNA-seq studies. Is predicted to encode a protein with the following domain: Phosphorylation site.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF40F8.5a
F40F8.5b
F40F8.5c
F40F8.5d
F40F8.5e
F40F8.5f
F40F8.5g
F40F8.5h
F40F8.5i
F40F8.5j
Corresponding_CDS_historyF40F8.5:wp92
F40F8.5:wp162
F40F8.5:wp228
Corresponding_transcriptF40F8.5a.1
F40F8.5b.1
F40F8.5c.1
F40F8.5d.1
F40F8.5e.1
F40F8.5f.1
F40F8.5g.1
F40F8.5h.1
F40F8.5i.1
F40F8.5j.1
Other_sequence (21)
Associated_featureWBsf716711
WBsf223898
Experimental_infoRNAi_resultWBRNAi00083275Inferred_automaticallyRNAi_primary
Expr_patternExpr1022901
Expr1034190
Expr1150744
Expr2003540
Expr2021757
Drives_constructWBCnstr00032088
Construct_productWBCnstr00032088
Microarray_results (23)
Expression_clusterWBPaper00035269:cde-1_regulated
WBPaper00037950:bodywall-muscle_CoreEnriched
WBPaper00037950:bodywall-muscle_embryo_enriched
WBPaper00037950:bodywall-muscle_embryo_SelectivelyEnriched
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:bodywall-muscle_larva_SelectivelyEnriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00043945:MeHg_downregulated
WBPaper00044426:rotenone_5day_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00045774:clk-1_upregulated_CoQ10_dependent
WBPaper00046337:monosomal_N2_vs_daf-2_downregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_upregulated_protein
WBPaper00046805:csr-1(RNAi)_upregulated_Set1
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048952:glucose_induced
WBPaper00048980:aging_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_downregulated
WBPaper00049217:DAF-16_upregulated
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00050053:muscle_enriched_Day4
WBPaper00050053:muscle_enriched_Day12
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050225:flp-6(RNAi)_upregulated
WBPaper00050344:PLM-neuron_enriched
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:ash-2(RNAi)_regulated_intestine
WBPaper00051039:intestine_enriched
WBPaper00051265:F4_morc-1(tm6048)_downregulated
WBPaper00051498:zinc-reduction_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:mitosis_vs_meiosis_upregulated
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053792:Ochrobactrum_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00053814:OP50_vs_PY79_downregulated_PY79
WBPaper00054192:cold-shock_upregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056039:ptl-1(ok621)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056218:daf-16(mu86)_upregulated_Day5
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056550:ceh-60(ok1485)_downregulated_AdultDay1
WBPaper00056826:hmc_biased
WBPaper00056900:TOFU-6_interacting
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057068:Cadmium_upregulated
WBPaper00057288:Cold_downregulated_protein
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059421:daf-1(m40)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059763:neuron_expressed
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_N2
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060951:mrpl-2(osa3)_upregulated
WBPaper00061007:HB115_upregulated
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061340:ADL
WBPaper00061340:BWM_anterior
WBPaper00061340:DVA
WBPaper00061341:28C_24h_upregulated
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061651:ADA_enriched
WBPaper00061651:Distal_tip_cell_enriched
WBPaper00061651:DVA_enriched
WBPaper00061651:LUA_enriched
WBPaper00061651:URB_enriched
WBPaper00061651:VC_enriched
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062305:P.brevicompactum_upregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062534:fat-P-80_upregulated_ech-6(RNAi)
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064952:Day10_vs_L4_upregulated_25C
WBPaper00065029:cadmium_upregulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065623:58
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:7_1
WBPaper00065841:7_2
WBPaper00065841:19_0
WBPaper00065841:31_0
WBPaper00065841:93_0
WBPaper00065841:100_0
WBPaper00065841:108_0
WBPaper00065841:117_0
WBPaper00065841:145_0
WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066085:sin-3(tm1276)_upregulated
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_X.nematophila_regulated
Interaction (110)
Map_infoPositivePositive_cloneF40F8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII3.32328
ReferenceWBPaper00033162
WBPaper00038491
WBPaper00064934
MethodGene