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WormBase Tree Display for Gene: WBGene00009429

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Name Class

WBGene00009429SMapS_parentSequenceF35E12
IdentityVersion2
NameCGC_nameirg-5Person_evidenceWBPerson9709
Sequence_nameF35E12.5
Molecular_nameF35E12.5
F35E12.5.1
CE38510
Other_nameCELE_F35E12.5Accession_evidenceNDBBX284605
Public_nameirg-5
DB_infoDatabaseAceViewgene5O218
WormQTLgeneWBGene00009429
WormFluxgeneWBGene00009429
NDBlocus_tagCELE_F35E12.5
PanthergeneCAEEL|WormBase=WBGene00009429|UniProtKB=O02357
familyPTHR21447
NCBIgene185307
RefSeqproteinNM_001380807.2
TREEFAMTREEFAM_IDTF316592
TrEMBLUniProtAccO02357
UniProt_GCRPUniProtAccO02357
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:50WBPerson1971EventImportedInitial conversion from CDS class of WS125
228 Sep 2016 15:57:39WBPerson2970Name_changeCGC_nameirg-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classirg
Allele (24)
StrainWBStrain00033153
RNASeq_FPKM (74)
GO_annotation00027140
00027141
Contained_in_operonCEOP5575
OrthologWBGene00135719Caenorhabditis japonicaFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00153028Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00194000Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00147711Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00138857Caenorhabditis brenneriFrom_analysisTreeFam
WormBase-Compara
WBGene00136453Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00052866Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00057832Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00072566Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00068261Caenorhabditis remaneiFrom_analysisTreeFam
WormBase-Compara
WBGene00179773Caenorhabditis japonicaFrom_analysisTreeFam
WormBase-Compara
WBGene00032607Caenorhabditis briggsaeFrom_analysisWormBase-Compara
CBOVI.g880Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP26.g9986Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g20641Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g20642Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g21251Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g5209Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g5210Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g18759Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18760Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g6365Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g2668Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2669Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2670Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2671Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2674Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g2675Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7060Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP39.g18605Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8256Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g8662Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g7689Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cnig_chr_V.g16336Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g14114Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00285.g8688Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00285.g8690Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00288.g8753Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_00751.g15113Caenorhabditis sinicaFrom_analysisWormBase-Compara
Csp5_scaffold_02903.g28332Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_12932Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_20506Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018642Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019507Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_020528Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_50166200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g16314Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00130111Caenorhabditis japonicaFrom_analysisWormBase-Compara
Paralog (17)
Structured_descriptionAutomated_descriptionInvolved in defense response to Gram-positive bacterium.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF35E12.5
Corresponding_transcriptF35E12.5.1
Associated_featureWBsf718448
WBsf1001883
WBsf1020761
WBsf234856
Experimental_infoRNAi_resultWBRNAi00014332Inferred_automaticallyRNAi_primary
WBRNAi00082471Inferred_automaticallyRNAi_primary
WBRNAi00046337Inferred_automaticallyRNAi_primary
WBRNAi00082614Inferred_automaticallyRNAi_primary
WBRNAi00078256Inferred_automaticallyRNAi_primary
Expr_patternExpr15756
Expr1012889
Expr1150225
Expr2012820
Drives_constructWBCnstr00005986
WBCnstr00017593
WBCnstr00032194
Construct_productWBCnstr00032194
Microarray_results (16)
Expression_cluster (405)
InteractionWBInteraction000188239
WBInteraction000318532
WBInteraction000386081
WBInteraction000425080
WBInteraction000518581
WBInteraction000518634
WBInteraction000520006
WBInteraction000524406
WBInteraction000535126
WBInteraction000535127
WBInteraction000535128
WBInteraction000535129
WBInteraction000535130
WBInteraction000535131
WBInteraction000535132
WBInteraction000535133
WBInteraction000535134
WBInteraction000535135
WBInteraction000535136
WBInteraction000535137
WBInteraction000535138
WBInteraction000535139
WBInteraction000535140
WBInteraction000535141
WBInteraction000535142
WBInteraction000535143
WBInteraction000535144
WBInteraction000535145
WBInteraction000535146
WBInteraction000535147
WBInteraction000535148
WBInteraction000535149
WBInteraction000535150
WBInteraction000537380
WBInteraction000537381
WBInteraction000541057
WBInteraction000544065
WBInteraction000544066
WBInteraction000544067
WBInteraction000544078
WBInteraction000549820
WBInteraction000549938
WBInteraction000577882
Map_infoMapVPosition5.58641
PositivePositive_cloneF35E12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (16)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene