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WormBase Tree Display for Gene: WBGene00009163

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Name Class

WBGene00009163SMapS_parentSequenceF26E4
IdentityVersion2
NameCGC_namedrsh-1Person_evidenceWBPerson490
Sequence_nameF26E4.10
Molecular_nameF26E4.10a
F26E4.10a.1
CE29039
F26E4.10b
CE46611
F26E4.10b.1
Other_nameCELE_F26E4.10Accession_evidenceNDBBX284601
Public_namedrsh-1
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
223 Jul 2004 12:37:47WBPerson1971Name_changeCGC_namedrsh-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdrsh
Allele (64)
StrainWBStrain00036356
WBStrain00049716
WBStrain00049591
WBStrain00050761
WBStrain00050760
WBStrain00050750
WBStrain00054650
In_clusterconserved_miRNA_siRNA_cluster
RNASeq_FPKM (74)
GO_annotation (25)
Contained_in_operonCEOP1564
OrthologWBGene00026581Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00143849Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00080030Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00125591Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00193803Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00194037Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00223882Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g9599Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g6721Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g3672Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g7798Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g13530Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4377Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4378Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g4381Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g19242Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g7998Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g13368Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g14919Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g5069Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g593Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00066.g3200Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00066.g3204Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00066.g3205Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_10227.g22531Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-drsh-1Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15331Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_01081.g18230Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17303Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_000627Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_000637Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14226Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g1206Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_10057200Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrI_pilon.g1907Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243645Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00258127Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00286933Trichuris murisFrom_analysisWormBase-Compara
WBGene00295999Trichuris murisFrom_analysisWormBase-Compara
FB:FBgn0026722Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-070209-23Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:17904Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1261425Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1307626Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionConcise_descriptiondrsh-1 encodes a predicted RNase III-type ribonuclease that is orthologous to Drosophila and human Drosha; by homology, DRSH-1 is predicted to function as an endoribonuclease that, in the nucleus, initiates cleavage of primary miRNA transcripts (pri-mRNAs) into pre-miRNAs that are then exported to the cytoplasm for further processing; loss of drsh-1 activity via RNAi results in re-expression of a let-7-silenced reporter in adults, suggesting that DRSH-1 is required for let-7 processing; in addition, DRSH-1 also appears to be required for fertility, as adults lacking drsh-1 activity are sterile; along with PASH-1, a double-stranded RNA binding protein, DRSH-1 may be part of a conserved multiprotein complex that regulates nuclear pri-miRNA splicing.Paper_evidenceWBPaper00024573
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated09 Nov 2004 00:00:00
Automated_descriptionEnables ribonuclease III activity. Involved in primary miRNA processing and sexual reproduction. Predicted to be located in nucleus. Predicted to be part of microprocessor complex. Is an ortholog of human DROSHA (drosha ribonuclease III).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF26E4.10a
F26E4.10b
Corresponding_CDS_historyF26E4.10:wp52
F26E4.10:wp62
F26E4.10b:wp228
Corresponding_transcriptF26E4.10a.1
F26E4.10b.1
Other_sequence (24)
Associated_featureWBsf649519
WBsf220147
WBsf220148
Experimental_infoRNAi_resultWBRNAi00045638Inferred_automaticallyRNAi_primary
WBRNAi00003483Inferred_automaticallyRNAi_primary
WBRNAi00061626Inferred_automaticallyRNAi_primary
WBRNAi00116443Inferred_automaticallyRNAi_primary
WBRNAi00084844Inferred_automaticallyRNAi_primary
WBRNAi00045637Inferred_automaticallyRNAi_primary
WBRNAi00003481Inferred_automaticallyRNAi_primary
WBRNAi00085189Inferred_automaticallyRNAi_primary
WBRNAi00031445Inferred_automaticallyRNAi_primary
Expr_patternExpr1026303
Expr1033995
Expr1149550
Expr2011097
Expr2029333
Drives_constructWBCnstr00032409
Construct_productWBCnstr00032409
Regulate_expr_clusterWBPaper00055896:drsh-1(ok369)_downregulated
WBPaper00055896:drsh-1(ok369)_upregulated
Microarray_results (25)
Expression_cluster (142)
Interaction (80)
WBProcessWBbiopr:00000057
WBbiopr:00000081
Map_infoMapIPosition3.89894Error0.002899
PositivePositive_cloneF26E4Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4838
4802
4721
Pseudo_map_position
Reference (22)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene