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WormBase Tree Display for Gene: WBGene00009106

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Name Class

WBGene00009106SMapS_parentSequenceF25C8
IdentityVersion2
NameCGC_nameacs-12Person_evidenceWBPerson237
WBPerson2239
Sequence_nameF25C8.4
Molecular_nameF25C8.4
F25C8.4.1
CE18637
Other_nameCELE_F25C8.4Accession_evidenceNDBBX284605
Public_nameacs-12
DB_infoDatabaseAceViewgene5V375
WormQTLgeneWBGene00009106
WormFluxgeneWBGene00009106
NDBlocus_tagCELE_F25C8.4
PanthergeneCAEEL|WormBase=WBGene00009106|UniProtKB=Q9XV68
familyPTHR24096
NCBIgene180375
RefSeqproteinNM_075634.5
TrEMBLUniProtAccQ9XV68
UniProt_GCRPUniProtAccQ9XV68
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
211 Sep 2008 09:57:25WBPerson2970Name_changeCGC_nameacs-12
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classacs
Allele (38)
RNASeq_FPKM (74)
GO_annotation00102297
00102298
00102299
00102300
00102301
Ortholog (38)
Paralog (17)
Structured_descriptionAutomated_descriptionPredicted to enable CoA-ligase activity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF25C8.4
Corresponding_transcriptF25C8.4.1
Other_sequence (18)
Associated_featureWBsf647772
WBsf662287
Experimental_infoRNAi_resultWBRNAi00013859Inferred_automaticallyRNAi_primary
WBRNAi00045484Inferred_automaticallyRNAi_primary
WBRNAi00031361Inferred_automaticallyRNAi_primary
Expr_patternExpr1018454
Expr1149401
Expr2009201
Expr2027439
Microarray_results (20)
Expression_clusterWBPaper00031040:Cluster_5
WBPaper00032425:down_in_rde-4
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:somatic_specific
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045521:Spermatogenic
WBPaper00045571:germline-ablation_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051257:Levamisole_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055049:S.gordonii_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056161:male_enriched_siRNA
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056826:SGP_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057041:spc-1(cas971)_downregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057288:Cold_upregulated_transcript
WBPaper00059191:hsp-16.2p-LIN-29_downregulated
WBPaper00059231:alh-6(lax105)_D3Adult_downregulated
WBPaper00059231:alh-6(lax105)_L4_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00061340:B_F_K_Kp_U_Y
WBPaper00061340:Coelomocyte
WBPaper00061340:GLR
WBPaper00061340:hmc_and_homolog
WBPaper00061340:hmc_homolog
WBPaper00061341:28C_24h_upregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061527:mlt-9_22518-F33D4.6_14044
WBPaper00062056:lin-35(n745)_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062590:Aging_upregulated_body-wall-muscle
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_PGCs
WBPaper00064632:daf-2(e1370)_upregulated_intestine
WBPaper00064716:paraquat_downregulated
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065841:49_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_23
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Erwinia_carotovora_upregulated
WBPaper00032165:A_to_C_transit_increased
WBPaper00032948:StarveUp2
WBPaper00034739:N2moreDR1350
WBPaper00034757:up_by_oxidative_stress
WBPaper00035588:alg-1(-)_upregulated
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00036286:Pattern_F
WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
WBPaper00040858:eQTL_age_regulated_aging
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_aging
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00040876:mir-35_downregulated
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5767]:cluster_2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(83_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(83_min)
Interaction (34)
Map_infoMapVPosition25.6887Error0.024225
PositivePositive_cloneF25C8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00042257
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene