WormBase Tree Display for Gene: WBGene00008598
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| WBGene00008598 | SMap | S_parent | Sequence | F09A5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spin-3 | Paper_evidence | WBPaper00042308 | |||||
| Sequence_name | F09A5.1 | ||||||||
| Molecular_name | F09A5.1 | ||||||||
| F09A5.1.1 | |||||||||
| CE40809 | |||||||||
| Other_name | CELE_F09A5.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | spin-3 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:49 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jun 2013 14:47:04 | WBPerson2970 | Name_change | CGC_name | spin-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spin | ||||||||
| Allele (64) | |||||||||
| Strain | WBStrain00032469 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00063987 | ||||||||
| 00063988 | |||||||||
| 00063989 | |||||||||
| 00116490 | |||||||||
| 00116491 | |||||||||
| Ortholog (55) | |||||||||
| Paralog | WBGene00007549 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00008033 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00013739 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Expressed in amphid neurons; intestine; and retrovesicular ganglion neurons. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Is an ortholog of human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); SPNS2 (SPNS lysolipid transporter 2, sphingosine-1-phosphate); and SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111643 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26992) | ||||
| Molecular_info | Corresponding_CDS | F09A5.1 | |||||||
| Corresponding_CDS_history | F09A5.1:wp102 | ||||||||
| F09A5.1:wp173 | |||||||||
| Corresponding_transcript | F09A5.1.1 | ||||||||
| Other_sequence | HC05598 | ||||||||
| ACC16946_1 | |||||||||
| EY471708.1 | |||||||||
| Dviv_isotig17614 | |||||||||
| HCC07391_1 | |||||||||
| Dviv_isotig17615 | |||||||||
| Associated_feature | WBsf236537 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00030682 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044069 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012942 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13201 | ||||||||
| Expr1026100 | |||||||||
| Expr1148034 | |||||||||
| Expr2034294 | |||||||||
| Drives_construct | WBCnstr00032841 | ||||||||
| WBCnstr00038866 | |||||||||
| Construct_product | WBCnstr00032841 | ||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction (11) | |||||||||
| Map_info | Map | X | Position | 10.2128 | |||||
| Positive | Positive_clone | F09A5 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061938 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
