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WormBase Tree Display for Gene: WBGene00008598

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Name Class

WBGene00008598SMapS_parentSequenceF09A5
IdentityVersion2
NameCGC_namespin-3Paper_evidenceWBPaper00042308
Sequence_nameF09A5.1
Molecular_nameF09A5.1
F09A5.1.1
CE40809
Other_nameCELE_F09A5.1Accession_evidenceNDBBX284606
Public_namespin-3
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
204 Jun 2013 14:47:04WBPerson2970Name_changeCGC_namespin-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspin
Allele (64)
StrainWBStrain00032469
RNASeq_FPKM (74)
GO_annotation00063987
00063988
00063989
00116490
00116491
Ortholog (55)
ParalogWBGene00007549Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008033Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013739Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Expressed in amphid neurons; intestine; and retrovesicular ganglion neurons. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Is an ortholog of human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); SPNS2 (SPNS lysolipid transporter 2, sphingosine-1-phosphate); and SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111643Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:26992)
Molecular_infoCorresponding_CDSF09A5.1
Corresponding_CDS_historyF09A5.1:wp102
F09A5.1:wp173
Corresponding_transcriptF09A5.1.1
Other_sequenceHC05598
ACC16946_1
EY471708.1
Dviv_isotig17614
HCC07391_1
Dviv_isotig17615
Associated_featureWBsf236537
Experimental_infoRNAi_resultWBRNAi00030682Inferred_automaticallyRNAi_primary
WBRNAi00044069Inferred_automaticallyRNAi_primary
WBRNAi00012942Inferred_automaticallyRNAi_primary
Expr_patternExpr13201
Expr1026100
Expr1148034
Expr2034294
Drives_constructWBCnstr00032841
WBCnstr00038866
Construct_productWBCnstr00032841
Microarray_results (18)
Expression_clusterWBPaper00031040:TGF-beta_adult_upregulated
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
WBPaper00044316:CH3HgCl_2.0uM_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:oscillating_dev_expression
WBPaper00045257:bar-1(ga80)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045918:96h_infection_recovery_downregulated
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_hel-1(gk148684)-background
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:skn-1(RNAi)_downregulated
WBPaper00048923:Aging_regulated
WBPaper00048952:glucose_repressed
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00049920:hyl-2(tm2031)_upregulated
WBPaper00050332:daf-16(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00051265:F1_morc-1(tm6048)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster6
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
WBPaper00054191:H3.3(null)_L1_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055648:male-vas-deferens_expressed
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056284:ints-1(RNAi)_upregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00058711:wdr-5(ok1417)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059604:fluvastatin_upregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_upregulated_N2
WBPaper00059605:mut-16(pk710)_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00059728:20ug_cholesterol_upregulated
WBPaper00059739:hira-1(gk835598)_downregulated_L4
WBPaper00059763:neuron_acr-2(n2420gf)_regulated
WBPaper00059839:S.maltophilia_regulated
WBPaper00060014:set-2(zr2012)_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_N2
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:nfki-1(cer1)_upregulated_L1
WBPaper00060661:hypoxia_upregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00060911:prx-5(RNAi)_downregulated_mRNA
WBPaper00061007:HB101_upregulated
WBPaper00061007:HB115_upregulated
WBPaper00061007:M.braciatum_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061007:X.citri_upregulated
WBPaper00061040:eat-2(ad1116)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061527:F55G1.15_14159-ncx-6
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00061952:daf-18(nr2037)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062345:bortezomib_4h_downregulated_zip-1(jy13)
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062590:Aging_downregulated_intestine
WBPaper00062669:extracellular-vesicle_protein
WBPaper00062684:pathogen_upregulated_CB4856
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064871:hypoxia_upregulated_F1
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065158:25C_vs_15C_downregulated_WholeAnimal
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_upregulated_cisplatin
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065749:Heat-Shock_downregulated_N2
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_downregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066004:tdp-1(csb38)_upregulated
cgc4489_group_3
WBPaper00006465:IV_ethanol_late_repression
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00036130:mir-243_down_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040821:Au-NP_regulated
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00042204:Comamonas_DA1877_upregulated
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00042258:DA1877_upregulated_YoungAdult
WBPaper00045673:colistin_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00055435:AuNPs_upregulated
WBPaper00055435:MUA-AuNP-0.5_upregulated
WBPaper00055435:MUA-AuNP-3_upregulated
Interaction (11)
Map_infoMapXPosition10.2128
PositivePositive_cloneF09A5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00061938
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene