WormBase Tree Display for Gene: WBGene00008598
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WBGene00008598 | SMap | S_parent | Sequence | F09A5 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | spin | |||||
Allele (64) | ||||||
Strain | WBStrain00032469 | |||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00063987 | |||||
00063988 | ||||||
00063989 | ||||||
00116490 | ||||||
00116491 | ||||||
Ortholog (55) | ||||||
Paralog | WBGene00007549 | Caenorhabditis elegans | From_analysis | Panther | ||
WormBase-Compara | ||||||
WBGene00008033 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | ||||||
WormBase-Compara | ||||||
WBGene00013739 | Caenorhabditis elegans | From_analysis | TreeFam | |||
Panther | ||||||
WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Expressed in amphid neurons; intestine; and retrovesicular ganglion neurons. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Is an ortholog of human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); SPNS2 (SPNS lysolipid transporter 2, sphingosine-1-phosphate); and SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)). | Paper_evidence | WBPaper00065943 | ||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Disease_info | Potential_model | DOID:0111643 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26992) | |
Molecular_info | Corresponding_CDS | F09A5.1 | ||||
Corresponding_CDS_history | F09A5.1:wp102 | |||||
F09A5.1:wp173 | ||||||
Corresponding_transcript | F09A5.1.1 | |||||
Other_sequence | HC05598 | |||||
ACC16946_1 | ||||||
EY471708.1 | ||||||
Dviv_isotig17614 | ||||||
HCC07391_1 | ||||||
Dviv_isotig17615 | ||||||
Associated_feature | WBsf236537 | |||||
Experimental_info | RNAi_result | WBRNAi00030682 | Inferred_automatically | RNAi_primary | ||
WBRNAi00044069 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00012942 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr13201 | |||||
Expr1026100 | ||||||
Expr1148034 | ||||||
Expr2034294 | ||||||
Drives_construct | WBCnstr00032841 | |||||
WBCnstr00038866 | ||||||
Construct_product | WBCnstr00032841 | |||||
Microarray_results (18) | ||||||
Expression_cluster (154) | ||||||
Interaction (11) | ||||||
Map_info | Map | X | Position | 10.2128 | ||
Positive | Positive_clone | F09A5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00038491 | |||||
WBPaper00055090 | ||||||
WBPaper00061938 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |