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WormBase Tree Display for Gene: WBGene00008409

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Name Class

WBGene00008409SMapS_parentSequenceD2023
IdentityVersion2
NameCGC_namempst-1Person_evidenceWBPerson1852
Sequence_nameD2023.5
Molecular_nameD2023.5
D2023.5.1
CE09075
Other_nameCELE_D2023.5Accession_evidenceNDBBX284605
Public_namempst-1
DB_infoDatabase (12)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:49WBPerson1971EventImportedInitial conversion from CDS class of WS125
203 Mar 2011 11:09:17WBPerson2970Name_changeCGC_namempst-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmpst
Allele (26)
StrainWBStrain00032344
RNASeq_FPKM (74)
GO_annotation00030519
00030520
00030521
00030522
00030523
00116310
Contained_in_operonCEOP5304
Ortholog (43)
ParalogWBGene00011307Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00010380Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00017387Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00022007Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00022006Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00010383Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable thiosulfate sulfurtransferase activity. Predicted to be located in mitochondrion. Is an ortholog of human MPST (mercaptopyruvate sulfurtransferase).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSD2023.5
Corresponding_transcriptD2023.5.1
Other_sequence (28)
Associated_featureWBsf653156
WBsf234587
Experimental_infoRNAi_resultWBRNAi00081139Inferred_automaticallyRNAi_primary
WBRNAi00001606Inferred_automaticallyRNAi_primary
WBRNAi00043455Inferred_automaticallyRNAi_primary
WBRNAi00012573Inferred_automaticallyRNAi_primary
WBRNAi00113622Inferred_automaticallyRNAi_primary
WBRNAi00113621Inferred_automaticallyRNAi_primary
Expr_patternExpr1027370
Expr1033645
Expr1147449
Expr2013675
Expr2031909
Drives_constructWBCnstr00032987
Construct_productWBCnstr00032987
Microarray_results (19)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032031:DConiospora_upregulated_cDNA_12h
WBPaper00032425:up_in_rde-4
WBPaper00032425:up_in_zfp-1
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Gender_Neutral
WBPaper00045729:gld-4(RNAi)_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046509:htz-1(ok3099)_downregulated
WBPaper00046509:lin-35(n745)_downregulated
WBPaper00046858:elt-2(RNAi)_upregulated
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:body-wall-muscle_cytoplasm_expressed
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00051245:intestine_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053388:dauer_regulated_Cluster1
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:S.aureus-4h_downregulated_N2
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00059328:mrps-5(RNAi)_downregulated_protein
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00060100:SiNP_downregulated_mRNA
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00060886:spr-5(by101)_upregulated
WBPaper00061340:ALN
WBPaper00061341:28C_24h_downregulated
WBPaper00061341:28C_48h_downregulated
WBPaper00061527:atad-3-mpst-1
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062590:Aging_downregulated_intestine
WBPaper00063976:micu-1(bon20)_upregulated
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_downregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4386_cluster_3_6
cgc4489_group_8
WBPaper00025032:cluster_46
WBPaper00025099:MA_specific
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00031003:24hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00032165:differentially_expressed_with_age_medoid_5
WBPaper00032948:FedUp
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_E
WBPaper00037695:WC_5-day
WBPaper00038060:SUMO-1_upregulated
WBPaper00038231:Cry5B_1.5-fold_downregulated
WBPaper00038231:Cry5B_2-fold_downregulated
WBPaper00040426:CYD-1_CDK-4_upregulated
WBPaper00041002:HF_3d_2.0mM_Down
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_24h
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00045960:L1-L4-lethargus_downregulated
WBPaper00045960:L4-lethargus_downregulated
WBPaper00047070:N2_starvation_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00049538:atfs-1(et18)_upregulated
WBPaper00050407:hsp-6(RNAi)_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(101_min)
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MDE
[cgc5767]:expression_class_MD_pd(PC32)
[cgc5767]:expression_class_ME
[cgc6390]:oogenesis-enriched
Interaction (85)
Map_infoMapVPosition3.3911Error0.002536
PositivePositive_cloneD2023Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00034662
WBPaper00038491
WBPaper00040475
WBPaper00044324
WBPaper00055090
WBPaper00059856
WBPaper00063976
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene