WormBase Tree Display for Gene: WBGene00008040

WBGene00008040 SMap: S_parent: Sequence: C40H1
  Identity: Version: 2
    Name: CGC_name: ttr-5
      Sequence_name: C40H1.5
      Molecular_name: C40H1.5
        C40H1.5.1
        CE00113
      Other_name: CELE_C40H1.5 Accession_evidence: NDB BX284603
      Public_name: ttr-5
    DB_info: Database: AceView gene 3K419
        WormQTL gene WBGene00008040
        WormFlux gene WBGene00008040
        NDB locus_tag CELE_C40H1.5
        Panther gene CAEEL|WormBase=WBGene00008040|UniProtKB=Q03575
          family PTHR21700
        NCBI gene 176312
        RefSeq protein NM_066653.4
        SwissProt UniProtAcc Q03575
        TREEFAM TREEFAM_ID TF315773
        UniProt_GCRP UniProtAcc Q03575
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:48 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 20 Sep 2007 11:48:01 WBPerson2970 Name_change: CGC_name: ttr-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ttr
    Allele: WBVar01500260
      WBVar01499774
      WBVar00849884
      WBVar00849885
      WBVar00849886
    RNASeq_FPKM (74)
    GO_annotation: 00052370
      00052371
      00052372
      00052373
      00115998
    Ortholog (37)
    Paralog (62)
    Structured_description: Concise_description: C40H1.5 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of C40H1.5 belongs to a family of apparently nematode-specific proteins whose function is not yet known. Paper_evidence: WBPaper00002969
          Curator_confirmed: WBPerson1843
          Date_last_updated: 04 Sep 2007 00:00:00
      Automated_description: Predicted to be located in cell surface and extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C40H1.5
    Corresponding_transcript: C40H1.5.1
    Other_sequence (118)
    Associated_feature: WBsf225550
  Experimental_info: RNAi_result: WBRNAi00029711 Inferred_automatically: RNAi_primary
      WBRNAi00011820 Inferred_automatically: RNAi_primary
      WBRNAi00006140 Inferred_automatically: RNAi_primary
      WBRNAi00078581 Inferred_automatically: RNAi_primary
      WBRNAi00042261 Inferred_automatically: RNAi_primary
      WBRNAi00078622 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1026349
      Expr1033494
      Expr1146252
      Expr2017624
      Expr2035764
    Drives_construct: WBCnstr00033283
    Construct_product: WBCnstr00033283
    Microarray_results (19)
    Expression_cluster (221)
    Interaction (177)
  Map_info: Map: III Position: 0.412782 Error: 0.003006
    Positive: Positive_clone: C40H1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00002969
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene