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WormBase Tree Display for Gene: WBGene00008033

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Name Class

WBGene00008033SMapS_parentSequenceC39E9
IdentityVersion2
NameCGC_namespin-2Paper_evidenceWBPaper00042308
Sequence_nameC39E9.10
Molecular_name (3)
Other_nameCELE_C39E9.10Accession_evidenceNDBBX284604
Public_namespin-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
204 Jun 2013 14:47:04WBPerson2970Name_changeCGC_namespin-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classspin
Allele (40)
StrainWBStrain00032395
RNASeq_FPKM (74)
GO_annotation00061613
00061614
00061615
00115996
00115997
Ortholog (61)
ParalogWBGene00007549Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00008598Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00013739Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Is an ortholog of human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); SPNS2 (SPNS lysolipid transporter 2, sphingosine-1-phosphate); and SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0111643Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:26992)
Molecular_infoCorresponding_CDSC39E9.10
Corresponding_transcriptC39E9.10.1
Other_sequenceES565464.1
HGC02054_1
TSC11110_1
FD516436.1
CSC01279_1
Associated_featureWBsf660867
WBsf660868
WBsf718221
WBsf229383
Experimental_infoRNAi_resultWBRNAi00000362Inferred_automaticallyRNAi_primary
WBRNAi00011785Inferred_automaticallyRNAi_primary
WBRNAi00029685Inferred_automaticallyRNAi_primary
WBRNAi00042215Inferred_automaticallyRNAi_primary
WBRNAi00085806Inferred_automaticallyRNAi_primary
WBRNAi00011794Inferred_automaticallyRNAi_primary
Expr_patternExpr1010809
Expr1033491
Expr1146206
Expr2016058
Expr2034293
Drives_constructWBCnstr00033290
Construct_productWBCnstr00033290
Microarray_results (20)
Expression_clusterWBPaper00031132:LiCl_upregulated
WBPaper00037682:sma-2_downregulated
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040420:ALM_PLM_enriched
WBPaper00042561:smgl-1(RNAi)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045417:128Q-huntingtin_downreglated
WBPaper00045571:germline-ablation_upregulated
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00046121:mesoderm_unique
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:skn-1(RNAi)_downregulated
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster3
WBPaper00053771:down_by_skn-1(RNAi)_at_dpy-7(e88)
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055648:nerve-ring_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056169:rrf-3(pk1426)_upregulated_L2
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058969:RIS_depleted
WBPaper00059117:B.subtilis_upregulated
WBPaper00059191:hsp-16.2p-LIN-29_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:g2
WBPaper00061340:mc1
WBPaper00061340:mc2
WBPaper00061340:mc3
WBPaper00061340:Pharyngeal_intestinal_valve
WBPaper00061340:Pharyngeal_marginal_cell
WBPaper00061340:pm3_pm4_pm5
WBPaper00061340:pm6
WBPaper00061340:pm7
WBPaper00061340:pm8
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061439:unc-30(ok613)_upregulated
WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061479:mep-1(ne4629)_upregulated
WBPaper00061527:rgs-2_11061-pde-1
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00065225:nhr-42(tm1375)_downregulated_S.aureus-infected
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065749:Heat-Shock_downregulated_endu-2(tm4977)
WBPaper00065841:26_0
WBPaper00065841:26_1
WBPaper00065841:26_2
WBPaper00065841:30_4
WBPaper00065841:41_0
WBPaper00065841:41_1
WBPaper00065841:78_0
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4489_group_16
cgc4489_group_20
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00027111:rrf-2(ok210)_upregulated
WBPaper00030985:Enterococcus_faecalis_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00034739:N2lessDR1350
WBPaper00035084:L1_enriched_AIN-2_IP
WBPaper00035084:L2_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035084:L4_enriched_AIN-2_IP
WBPaper00036123:Fluoranthene_regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00041174:environmental
WBPaper00041174:environmental_prime
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00045960:L4-lethargus_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048567:dnj-14_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_rapamycin_upregulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc6390]:Cluster_C
InteractionWBInteraction000033876
WBInteraction000046337
WBInteraction000227854
WBInteraction000280589
WBInteraction000580571
Map_infoMapIVPosition7.8248
PositivePositive_cloneC39E9Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00055090
WBPaper00058991
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene