WormBase Tree Display for Gene: WBGene00007848
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| WBGene00007848 | SMap | S_parent | Sequence | C31E10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cytb-5.1 | Person_evidence | WBPerson681 | |||||
| Sequence_name | C31E10.7 | ||||||||
| Molecular_name | C31E10.7 | ||||||||
| C31E10.7.1 | |||||||||
| CE37487 | |||||||||
| Other_name | cytochrome b5 | Paper_evidence | WBPaper00040883 | ||||||
| CELE_C31E10.7 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | cytb-5.1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:48 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 30 Sep 2011 16:40:15 | WBPerson2970 | Name_change | CGC_name | cytb-5.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cytb | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00085658 | ||||||||
| 00085659 | |||||||||
| 00085660 | |||||||||
| 00085661 | |||||||||
| 00085662 | |||||||||
| 00085663 | |||||||||
| 00085664 | |||||||||
| 00085665 | |||||||||
| Ortholog (48) | |||||||||
| Paralog | WBGene00010235 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00014300 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020931 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cytb-5.1 encodes a protein orthologous to cytochrome b5; a CYTB-5.1 reporter fusion protein, when expressed in the distal tip cell, exhibits perinuclear localization, consistent with localization to the endoplasmic reticulum. | Paper_evidence | WBPaper00040883 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 16 Mar 2012 00:00:00 | ||||||||
| Automated_description | Predicted to enable heme binding activity. Located in perinuclear region of cytoplasm. Used to study hematopoietic system disease. Human ortholog(s) of this gene implicated in methemoglobinemia; methemoglobinemia and ambiguous genitalia; and stomatitis. Is an ortholog of human CYB5A (cytochrome b5 type A) and CYB5B (cytochrome b5 type B). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Experimental_model | DOID:74 | Homo sapiens | Paper_evidence | WBPaper00053474 | ||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 09 May 2023 00:00:00 | ||||||||
| Potential_model | DOID:0112316 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2570) | |||||
| DOID:10783 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2570) | ||||||
| DOID:9637 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:2570) | ||||||
| Models_disease_in_annotation | WBDOannot00000049 | ||||||||
| Molecular_info | Corresponding_CDS | C31E10.7 | |||||||
| Corresponding_CDS_history | C31E10.7:wp132 | ||||||||
| Corresponding_transcript | C31E10.7.1 | ||||||||
| Other_sequence (80) | |||||||||
| Associated_feature | WBsf648705 | ||||||||
| WBsf655229 | |||||||||
| WBsf663528 | |||||||||
| WBsf1007797 | |||||||||
| WBsf1024340 | |||||||||
| WBsf236630 | |||||||||
| WBsf236631 | |||||||||
| WBsf236632 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00033345 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00024689 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071638 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111894 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008470 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00105933 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00071637 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041615 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088736 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00088629 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr13447 | ||||||||
| Expr1024592 | |||||||||
| Expr1033402 | |||||||||
| Expr1145640 | |||||||||
| Expr2010751 | |||||||||
| Expr2028988 | |||||||||
| Drives_construct | WBCnstr00033436 | ||||||||
| Construct_product | WBCnstr00000237 | ||||||||
| WBCnstr00033436 | |||||||||
| WBCnstr00040361 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (180) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | X | Position | 15.9609 | |||||
| Positive | Positive_clone | C31E10 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00034497 | ||||||||
| WBPaper00034498 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040883 | |||||||||
| WBPaper00053474 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060223 | |||||||||
| WBPaper00061328 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
