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WormBase Tree Display for Gene: WBGene00007340

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Name Class

WBGene00007340SMapS_parentSequenceC05D12
IdentityVersion1
NameSequence_nameC05D12.2
Molecular_nameC05D12.2
C05D12.2.1
CE52734
Other_nameCELE_C05D12.2Accession_evidenceNDBBX284602
Public_nameC05D12.2
DB_infoDatabaseAceViewgene2L713
WormQTLgeneWBGene00007340
WormFluxgeneWBGene00007340
NDBlocus_tagCELE_C05D12.2
PanthergeneCAEEL|WormBase=WBGene00007340|UniProtKB=Q17657
familyPTHR47324
NCBIgene174741
RefSeqproteinNM_001365322.2
TREEFAMTREEFAM_IDTF320379
TrEMBLUniProtAccQ17657
UniProt_GCRPUniProtAccQ17657
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:47WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (79)
RNASeq_FPKM (74)
Ortholog (25)
ParalogWBGene00018237Caenorhabditis elegansFrom_analysisTreeFam
WBGene00022858Caenorhabditis elegansFrom_analysisTreeFam
WBGene00012018Caenorhabditis elegansFrom_analysisTreeFam
WBGene00017892
WBGene00014666Caenorhabditis elegansFrom_analysisInparanoid_8
WormBase-Compara
WBGene00019957Caenorhabditis elegansFrom_analysisTreeFam
WBGene00021233Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Structured_descriptionAutomated_descriptionEnriched in head mesodermal cell and intestine based on RNA-seq studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray and RNA-seq studies. Is affected by fifteen chemicals including rotenone; Zidovudine; and Psoralens based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC05D12.2
Corresponding_CDS_historyC05D12.2:wp90
C05D12.2:wp266
Corresponding_transcriptC05D12.2.1
Other_sequenceCRC00218_1
Associated_featureWBsf1013236
Experimental_infoRNAi_resultWBRNAi00028499Inferred_automaticallyRNAi_primary
WBRNAi00039744Inferred_automaticallyRNAi_primary
WBRNAi00010202Inferred_automaticallyRNAi_primary
Expr_patternExpr1026381
Expr1143835
Expr2000466
Expr2018689
Drives_constructWBCnstr00033817
Construct_productWBCnstr00033817
Microarray_results (18)
Expression_clusterWBPaper00030922:glycosylated_protein
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032031:DConiospora_downregulated_cDNA_24h
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L1-larva_expressed
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:oscillating_dev_expression
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_upregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_downregulated
WBPaper00046337:polysomal_N2_vs_daf-2_downregulated
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00047132:glp-1(ts)-25C_upregulated
WBPaper00048971:daf-16(mgDf50)_downregulated_L1
WBPaper00048988:neuron_expressed
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00051558:aging_regulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053318:mir-71(n4115)_downregulated_mRNA
WBPaper00053321:mes-2(RNAi)_upregulated_fed-L1_Truseq
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Psora_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin-Psora_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055648:vulva-uterus_expressed
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056161:male_enriched_siRNA
WBPaper00056169:rrf-3(pk1426)_downregulated_L2
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056284:ints-6(t1903)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
WBPaper00056826:hmc_biased
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00059253:stearic-acid_upregulated
WBPaper00059253:sucrose_stearic-acid_upregulated
WBPaper00059253:sucrose_upregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061341:28C_48h_downregulated
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4752)_upregulated
WBPaper00061527:ZC373.2-Y62H9A.6_1596
WBPaper00061952:daf-18(nr2037)_downregulated
WBPaper00061952:daf-18(yh1)_downregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062193:skn-1(RNAi)_downregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_downregulated_N2
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062440:crh-1(syb385)_downregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064632:daf-2(e1370)_upregulated_intestine
WBPaper00064716:paraquat_downregulated
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:N2_N.ferruginous_regulated
WBPaper00065578:gcn-1(nc40)_upregulated
WBPaper00065581:hpk-1(pk1393)_downregulated
WBPaper00065841:9_0
WBPaper00065841:9_1
WBPaper00065841:9_2
WBPaper00065841:11_2
WBPaper00065841:15_0
WBPaper00065841:114_0
WBPaper00065841:121_0
WBPaper00065841:122_0
WBPaper00065841:131_0
WBPaper00065841:138_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_7
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00032948:StarveUp2
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-7_regulated
WBPaper00035873:osm-11_regulated
WBPaper00036286:Pattern_I
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040963:Q100_up
WBPaper00040963:Q200_up
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00046083:pmk-1(km25)_OP50_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00050538:Fasting_upregulated_cholesterol-dependent
WBPaper00053236:Starvation_regulated_N2
WBPaper00053688:E.faecium_upregulated
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
[cgc6390]:herm_soma-enriched
InteractionWBInteraction000355397
WBInteraction000547102
Map_infoPositivePositive_cloneC05D12Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII3.46535
ReferenceWBPaper00060662
WBPaper00065331
MethodGene