WormBase Tree Display for Gene: WBGene00007058
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| WBGene00007058 | SMap | S_parent | Sequence | F13G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | dmd-6 | Person_evidence | WBPerson1997 | |||||
| WBPerson1375 | |||||||||
| Sequence_name | F13G11.1 | ||||||||
| Molecular_name | F13G11.1b | ||||||||
| F13G11.1b.1 | |||||||||
| CE17661 | |||||||||
| F13G11.1c | |||||||||
| CE44552 | |||||||||
| F13G11.1d | |||||||||
| CE44560 | |||||||||
| F13G11.1b.2 | |||||||||
| F13G11.1c.1 | |||||||||
| F13G11.1d.1 | |||||||||
| Other_name | tag-193 | Person_evidence | WBPerson201 | ||||||
| CELE_F13G11.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | dmd-6 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 13:09:06 | WBPerson1845 | Event | Created | |||
| 2 | 16 Jun 2006 16:28:50 | WBPerson2970 | Name_change | CGC_name | dmd-6 | ||||
| Other_name | tag-193 | ||||||||
| 3 | 10 Jun 2014 12:12:12 | WBPerson1983 | Event | Acquires_merge | WBGene00008771 | ||||
| Acquires_merge | WBGene00008771 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dmd | ||||||||
| Allele (127) | |||||||||
| Strain | WBStrain00035927 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00003100 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00003114 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00012832 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017326 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019521 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007929 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00020708 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007776 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II and sex differentiation. Predicted to be located in nucleus. Expressed in several structures, including neurons; pharynx; rectum; tail; and vulva. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13G11.1b | |||||||
| F13G11.1c | |||||||||
| F13G11.1d | |||||||||
| Corresponding_CDS_history | F13G11.1a:wp229 | ||||||||
| Corresponding_transcript | F13G11.1b.1 | ||||||||
| F13G11.1b.2 | |||||||||
| F13G11.1c.1 | |||||||||
| F13G11.1d.1 | |||||||||
| Other_sequence | Dviv_isotig13382 | ||||||||
| Oden_isotig27751 | |||||||||
| ES743563.1 | |||||||||
| Tcol_isotig17762 | |||||||||
| HBC08398_1 | |||||||||
| Dviv_isotig25506 | |||||||||
| AY534891.1 | |||||||||
| CJC03186_1 | |||||||||
| CBC16217_1 | |||||||||
| Associated_feature (29) | |||||||||
| Transcription_factor | WBTranscriptionFactor000986 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00013236 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00030900 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044531 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9817 | ||||||||
| Expr9820 | |||||||||
| Expr9821 | |||||||||
| Expr1019760 | |||||||||
| Expr1033032 | |||||||||
| Expr1148483 | |||||||||
| Expr2010957 | |||||||||
| Expr2029196 | |||||||||
| Drives_construct | WBCnstr00014337 | ||||||||
| WBCnstr00014340 | |||||||||
| WBCnstr00014341 | |||||||||
| WBCnstr00034023 | |||||||||
| Construct_product | WBCnstr00034023 | ||||||||
| Microarray_results (29) | |||||||||
| Expression_cluster (180) | |||||||||
| Interaction (73) | |||||||||
| Map_info | Map | IV | Position | 12.2712 | Error | 0.002366 | |||
| Positive | Positive_clone | F13G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5531 | |||||||
| 4393 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00051737 | ||||||||
| Remark | tag-193 is parsed from CGC strain VC622 | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| [140610 pad] Gene was missing Acquires_merge Event history data so inferred from Acquires_merge tag. | |||||||||
| Method | Gene |
