WormBase Tree Display for Gene: WBGene00017326
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| WBGene00017326 | SMap | S_parent | Sequence | F10C1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | dmd-5 | Person_evidence | WBPerson1375 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | F10C1.5 | ||||||||
| Molecular_name | F10C1.5 | ||||||||
| F10C1.5.1 | |||||||||
| CE29753 | |||||||||
| Other_name | CELE_F10C1.5 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | dmd-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | dmd-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dmd | ||||||||
| Allele (25) | |||||||||
| Strain | WBStrain00031994 | ||||||||
| WBStrain00051973 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (40) | |||||||||
| Paralog | WBGene00003100 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003114 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007058 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00007776 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WormBase-Compara | |||||||||
| WBGene00007929 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00012832 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022060 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00019521 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00020708 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in male anatomical structure morphogenesis and negative regulation of synapse pruning. Predicted to be located in nucleus. Expressed in AVG; ventral nerve cord; and in male. Is an ortholog of human DMRTA2 (DMRT like family A2) and DMRTB1 (DMRT like family B with proline rich C-terminal 1). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F10C1.5 | |||||||
| Corresponding_transcript | F10C1.5.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature | WBsf650093 | ||||||||
| WBsf978816 | |||||||||
| WBsf987958 | |||||||||
| WBsf1012263 | |||||||||
| WBsf223096 | |||||||||
| Transcription_factor | WBTranscriptionFactor000309 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00071147 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00027266 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00025056 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044219 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030749 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00066782 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013036 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr5714 | ||||||||
| Expr7499 | |||||||||
| Expr14521 | |||||||||
| Expr1013292 | |||||||||
| Expr1037450 | |||||||||
| Expr1148178 | |||||||||
| Expr1200011 | |||||||||
| Expr2010956 | |||||||||
| Expr2029195 | |||||||||
| Drives_construct | WBCnstr00004010 | ||||||||
| WBCnstr00012644 | |||||||||
| WBCnstr00027385 | |||||||||
| WBCnstr00041072 | |||||||||
| Construct_product | WBCnstr00027385 | ||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (117) | |||||||||
| Interaction (162) | |||||||||
| Map_info | Map | II | Position | -0.93372 | Error | 0.004814 | |||
| Positive | Positive_clone | F10C1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5321 | |||||||
| 4278 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027309 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00047608 | |||||||||
| WBPaper00049547 | |||||||||
| WBPaper00052199 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064718 | |||||||||
| WBPaper00064934 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
