WormBase Tree Display for Gene: WBGene00006985
expand all nodes | collapse all nodes | view schema
| WBGene00006985 | SMap | S_parent | Sequence | Y39E4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | zig-8 | Person_evidence | WBPerson260 | |||||
| Sequence_name | Y39E4B.8 | ||||||||
| Molecular_name | Y39E4B.8 | ||||||||
| Y39E4B.8.1 | |||||||||
| CE24241 | |||||||||
| Other_name | CELE_Y39E4B.8 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | zig-8 | ||||||||
| DB_info | Database | AceView | gene | 3O221 | |||||
| WormQTL | gene | WBGene00006985 | |||||||
| WormFlux | gene | WBGene00006985 | |||||||
| NDB | locus_tag | CELE_Y39E4B.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006985|UniProtKB=G5ED00 | |||||||
| family | PTHR23279 | ||||||||
| NCBI | gene | 176732 | |||||||
| RefSeq | protein | NM_067313.7 | |||||||
| SwissProt | UniProtAcc | G5ED00 | |||||||
| TREEFAM | TREEFAM_ID | TF351101 | |||||||
| UniProt_GCRP | UniProtAcc | G5ED00 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:44 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zig | ||||||||
| Allele (216) | |||||||||
| Strain | WBStrain00001759 | ||||||||
| WBStrain00031492 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00012881 | ||||||||
| 00012882 | |||||||||
| 00012883 | |||||||||
| 00012884 | |||||||||
| Ortholog (44) | |||||||||
| Paralog | WBGene00020800 | Caenorhabditis elegans | From_analysis | Panther | |||||
| Structured_description | Concise_description | zig-8 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-8::gfp reporter fusion is expressed in the PVT neuron and in pharyngeal muscle. | Paper_evidence | WBPaper00005064 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Jan 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in synapse organization. Predicted to be located in neuron projection membrane. Expressed in PVT; head; and pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39E4B.8 | |||||||
| Corresponding_transcript | Y39E4B.8.1 | ||||||||
| Other_sequence (15) | |||||||||
| Associated_feature (17) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00056250 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00036950 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020406 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram289 | ||||||||
| Expr1754 | |||||||||
| Expr6957 | |||||||||
| Expr1019627 | |||||||||
| Expr1032986 | |||||||||
| Expr1159734 | |||||||||
| Expr2018147 | |||||||||
| Expr2036284 | |||||||||
| Drives_construct | WBCnstr00001582 | ||||||||
| WBCnstr00001583 | |||||||||
| WBCnstr00001584 | |||||||||
| WBCnstr00002574 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction | WBInteraction000345265 | ||||||||
| WBInteraction000400639 | |||||||||
| WBInteraction000445640 | |||||||||
| WBInteraction000446771 | |||||||||
| WBInteraction000456797 | |||||||||
| WBInteraction000501828 | |||||||||
| WBInteraction000546328 | |||||||||
| Map_info | Map | III | Position | 20.7774 | Error | 0.014666 | |||
| Positive | Positive_clone | Y39E4B | Person_evidence | WBPerson260 | |||||
| Inferred_automatically | From sequence, transcript, pseudogene data | ||||||||
| Mapping_data | Multi_point | 4675 | |||||||
| 4768 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (15) | |||||||||
| Remark | zig-8 has been reassigned to a new 2-Ig predicted gene, following email from O Hobert. 0103 [sdm] | ||||||||
| zig-8 was previosuly assigned to C36F7.3 and .4 [sdm] | |||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
