WormBase Tree Display for Gene: WBGene00006985
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WBGene00006985 | SMap | S_parent | Sequence | Y39E4B | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | zig | ||||||
Allele (216) | |||||||
Strain | WBStrain00001759 | ||||||
WBStrain00031492 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00012881 | ||||||
00012882 | |||||||
00012883 | |||||||
00012884 | |||||||
Ortholog (44) | |||||||
Paralog | WBGene00020800 | Caenorhabditis elegans | From_analysis | Panther | |||
Structured_description | Concise_description | zig-8 encodes a predicted secreted protein that is a member of the immunoglobulin superfamily of proteins; a zig-8::gfp reporter fusion is expressed in the PVT neuron and in pharyngeal muscle. | Paper_evidence | WBPaper00005064 | |||
Curator_confirmed | WBPerson1843 | ||||||
Date_last_updated | 14 Jan 2008 00:00:00 | ||||||
Automated_description | Predicted to be involved in synapse organization. Predicted to be located in neuron projection membrane. Expressed in PVT; head; and pharyngeal muscle cell. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y39E4B.8 | |||||
Corresponding_transcript | Y39E4B.8.1 | ||||||
Other_sequence (15) | |||||||
Associated_feature (17) | |||||||
Experimental_info | RNAi_result | WBRNAi00056250 | Inferred_automatically | RNAi_primary | |||
WBRNAi00036950 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020406 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram289 | ||||||
Expr1754 | |||||||
Expr6957 | |||||||
Expr1019627 | |||||||
Expr1032986 | |||||||
Expr1159734 | |||||||
Expr2018147 | |||||||
Expr2036284 | |||||||
Drives_construct | WBCnstr00001582 | ||||||
WBCnstr00001583 | |||||||
WBCnstr00001584 | |||||||
WBCnstr00002574 | |||||||
Microarray_results (19) | |||||||
Expression_cluster (154) | |||||||
Interaction | WBInteraction000345265 | ||||||
WBInteraction000400639 | |||||||
WBInteraction000445640 | |||||||
WBInteraction000446771 | |||||||
WBInteraction000456797 | |||||||
WBInteraction000501828 | |||||||
WBInteraction000546328 | |||||||
Map_info | Map | III | Position | 20.7774 | Error | 0.014666 | |
Positive | Positive_clone | Y39E4B | Person_evidence | WBPerson260 | |||
Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
Mapping_data | Multi_point | 4675 | |||||
4768 | |||||||
Pseudo_map_position | |||||||
Reference (15) | |||||||
Remark | zig-8 has been reassigned to a new 2-Ig predicted gene, following email from O Hobert. 0103 [sdm] | ||||||
zig-8 was previosuly assigned to C36F7.3 and .4 [sdm] | |||||||
Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||
Method | Gene |