WormBase Tree Display for Gene: WBGene00006929
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| WBGene00006929 | SMap | S_parent | Sequence | C04F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | vit-5 | Person_evidence | WBPerson71 | |||||
| Sequence_name | C04F6.1 | ||||||||
| Molecular_name | C04F6.1 | ||||||||
| C04F6.1.1 | |||||||||
| CE03921 | |||||||||
| Other_name | CELE_C04F6.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | vit-5 | ||||||||
| DB_info | Database | AceView | gene | XE27 | |||||
| WormQTL | gene | WBGene00006929 | |||||||
| WormFlux | gene | WBGene00006929 | |||||||
| NDB | locus_tag | CELE_C04F6.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006929|UniProtKB=P06125 | |||||||
| family | PTHR23345 | ||||||||
| NCBI | gene | 180630 | |||||||
| RefSeq | protein | NM_076188.7 | |||||||
| SwissProt | UniProtAcc | P06125 | |||||||
| TREEFAM | TREEFAM_ID | TF332911 | |||||||
| UniProt_GCRP | UniProtAcc | P06125 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:43 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vit | ||||||||
| Allele (77) | |||||||||
| Legacy_information | Structural gene for vitellogenin yp170A; completely sequenced. | ||||||||
| [C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes 1603 aa vitellogenin yp170A. [Spieth et al. 1985; BL] | |||||||||
| Strain | WBStrain00033057 | ||||||||
| WBStrain00047210 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00038899 | ||||||||
| 00038900 | |||||||||
| 00038901 | |||||||||
| 00038902 | |||||||||
| 00115042 | |||||||||
| 00115043 | |||||||||
| Ortholog (92) | |||||||||
| Paralog | WBGene00006925 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006926 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006927 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006928 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006930 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent; by homology, VIT-5 is predicted to function as a lipid transport protein; loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth; VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. | Paper_evidence | WBPaper00000808 | |||||
| WBPaper00005654 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C04F6.1 | |||||||
| Corresponding_transcript | C04F6.1.1 | ||||||||
| Other_sequence (213) | |||||||||
| Associated_feature | WBsf1004607 | ||||||||
| Experimental_info | RNAi_result (43) | ||||||||
| Expr_pattern | Expr5148 | ||||||||
| Expr10734 | |||||||||
| Expr16164 | |||||||||
| Expr1018292 | |||||||||
| Expr1032944 | |||||||||
| Expr1143744 | |||||||||
| Expr2018003 | |||||||||
| Expr2036140 | |||||||||
| Drives_construct | WBCnstr00002527 | ||||||||
| WBCnstr00020075 | |||||||||
| WBCnstr00034091 | |||||||||
| WBCnstr00042811 | |||||||||
| Construct_product | WBCnstr00034091 | ||||||||
| Regulate_expr_cluster | WBPaper00064939:vit-5(RNAi)_downregulated | ||||||||
| WBPaper00064939:vit-5(RNAi)_upregulated | |||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (324) | |||||||||
| Interaction (207) | |||||||||
| Map_info | Map | X | Position | -10.358 | Error | 0.005327 | |||
| Positive | Positive_clone | C04F6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00000783 | ||||||||
| WBPaper00000803 | |||||||||
| WBPaper00000808 | |||||||||
| WBPaper00000873 | |||||||||
| WBPaper00000907 | |||||||||
| WBPaper00001400 | |||||||||
| WBPaper00001415 | |||||||||
| WBPaper00001442 | |||||||||
| WBPaper00001561 | |||||||||
| WBPaper00001567 | |||||||||
| WBPaper00001660 | |||||||||
| WBPaper00001720 | |||||||||
| WBPaper00001722 | |||||||||
| WBPaper00001841 | |||||||||
| WBPaper00001971 | |||||||||
| WBPaper00002006 | |||||||||
| WBPaper00002292 | |||||||||
| WBPaper00002443 | |||||||||
| WBPaper00003452 | |||||||||
| WBPaper00005124 | |||||||||
| WBPaper00005976 | |||||||||
| WBPaper00006232 | |||||||||
| WBPaper00006387 | |||||||||
| WBPaper00013710 | |||||||||
| WBPaper00013773 | |||||||||
| WBPaper00013954 | |||||||||
| WBPaper00013956 | |||||||||
| WBPaper00013992 | |||||||||
| WBPaper00014004 | |||||||||
| WBPaper00014087 | |||||||||
| WBPaper00014144 | |||||||||
| WBPaper00014145 | |||||||||
| WBPaper00014168 | |||||||||
| WBPaper00014311 | |||||||||
| WBPaper00014429 | |||||||||
| WBPaper00015440 | |||||||||
| WBPaper00016416 | |||||||||
| WBPaper00016575 | |||||||||
| WBPaper00024704 | |||||||||
| WBPaper00025088 | |||||||||
| WBPaper00026592 | |||||||||
| WBPaper00026643 | |||||||||
| WBPaper00030454 | |||||||||
| WBPaper00042349 | |||||||||
| WBPaper00043016 | |||||||||
| WBPaper00047553 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00050313 | |||||||||
| WBPaper00051305 | |||||||||
| WBPaper00051532 | |||||||||
| WBPaper00051691 | |||||||||
| WBPaper00053100 | |||||||||
| WBPaper00056386 | |||||||||
| WBPaper00059256 | |||||||||
| WBPaper00059995 | |||||||||
| WBPaper00061341 | |||||||||
| WBPaper00062002 | |||||||||
| WBPaper00062412 | |||||||||
| WBPaper00065026 | |||||||||
| WBPaper00065275 | |||||||||
| Remark | Map X | ||||||||
| Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
