WormBase Tree Display for Gene: WBGene00006929

WBGene00006929 SMap: S_parent: Sequence: C04F6
  Identity: Version: 1
    Name: CGC_name: vit-5 Person_evidence: WBPerson71
      Sequence_name: C04F6.1
      Molecular_name: C04F6.1
        C04F6.1.1
        CE03921
      Other_name: CELE_C04F6.1 Accession_evidence: NDB BX284606
      Public_name: vit-5
    DB_info: Database: AceView gene XE27
        WormQTL gene WBGene00006929
        WormFlux gene WBGene00006929
        NDB locus_tag CELE_C04F6.1
        Panther gene CAEEL|WormBase=WBGene00006929|UniProtKB=P06125
          family PTHR23345
        NCBI gene 180630
        RefSeq protein NM_076188.7
        SwissProt UniProtAcc P06125
        TREEFAM TREEFAM_ID TF332911
        UniProt_GCRP UniProtAcc P06125
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:43 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: vit
    Allele (77)
    Legacy_information: Structural gene for vitellogenin yp170A; completely sequenced.
      [C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes 1603 aa vitellogenin yp170A. [Spieth et al. 1985; BL]
    Strain: WBStrain00033057
      WBStrain00047210
    RNASeq_FPKM (74)
    GO_annotation: 00038899
      00038900
      00038901
      00038902
      00115042
      00115043
    Ortholog (92)
    Paralog: WBGene00006925 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006926 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00006927 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006928 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00006930 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Concise_description: vit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent; by homology, VIT-5 is predicted to function as a lipid transport protein; loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth; VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes. Paper_evidence: WBPaper00000808
            WBPaper00005654
          Curator_confirmed: WBPerson1843
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Predicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C04F6.1
    Corresponding_transcript: C04F6.1.1
    Other_sequence (213)
    Associated_feature: WBsf1004607
  Experimental_info: RNAi_result (43)
    Expr_pattern: Expr5148
      Expr10734
      Expr16164
      Expr1018292
      Expr1032944
      Expr1143744
      Expr2018003
      Expr2036140
    Drives_construct: WBCnstr00002527
      WBCnstr00020075
      WBCnstr00034091
      WBCnstr00042811
    Construct_product: WBCnstr00034091
    Regulate_expr_cluster: WBPaper00064939:vit-5(RNAi)_downregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
    Microarray_results (22)
    Expression_cluster (324)
    Interaction: WBInteraction000005590
      WBInteraction000005617
      WBInteraction000029118
      WBInteraction000103812
      WBInteraction000107268
      WBInteraction000112045
      WBInteraction000115633
      WBInteraction000117530
      WBInteraction000117589
      WBInteraction000120540
      WBInteraction000121750
      WBInteraction000123006
      WBInteraction000123007
      WBInteraction000126672
      WBInteraction000127055
      WBInteraction000135103
      WBInteraction000136673
      WBInteraction000140942
      WBInteraction000140943
      WBInteraction000140944
      WBInteraction000141963
      WBInteraction000144157
      WBInteraction000149498
      WBInteraction000152466
      WBInteraction000156895
      WBInteraction000162582
      WBInteraction000162583
      WBInteraction000167688
      WBInteraction000167689
      WBInteraction000167690
      WBInteraction000167691
      WBInteraction000167692
      WBInteraction000167693
      WBInteraction000168064
      WBInteraction000169796
      WBInteraction000174039
      WBInteraction000174040
      WBInteraction000174660
      WBInteraction000175037
      WBInteraction000175821
      WBInteraction000179607
      WBInteraction000181273
      WBInteraction000184616
      WBInteraction000184979
      WBInteraction000185859
      WBInteraction000190175
      WBInteraction000197739
      WBInteraction000201687
      WBInteraction000201983
      WBInteraction000205172
      WBInteraction000206654
      WBInteraction000209012
      WBInteraction000209440
      WBInteraction000213664
      WBInteraction000213841
      WBInteraction000214205
      WBInteraction000214891
      WBInteraction000216509
      WBInteraction000220770
      WBInteraction000220818
      WBInteraction000223313
      WBInteraction000225504
      WBInteraction000225594
      WBInteraction000226439
      WBInteraction000226770
      WBInteraction000226807
      WBInteraction000228147
      WBInteraction000231594
      WBInteraction000233013
      WBInteraction000233249
      WBInteraction000233641
      WBInteraction000239678
      WBInteraction000241107
      WBInteraction000244170
      WBInteraction000250925
      WBInteraction000253860
      WBInteraction000258235
      WBInteraction000258429
      WBInteraction000262263
      WBInteraction000265169
      WBInteraction000268478
      WBInteraction000270941
      WBInteraction000271160
      WBInteraction000271959
      WBInteraction000273258
      WBInteraction000277510
      WBInteraction000278277
      WBInteraction000280987
      WBInteraction000282186
      WBInteraction000284663
      WBInteraction000289854
      WBInteraction000290663
      WBInteraction000291617
      WBInteraction000296874
      WBInteraction000297378
      WBInteraction000297973
      WBInteraction000298791
      WBInteraction000299666
      WBInteraction000299702
      WBInteraction000301329
      WBInteraction000301468
      WBInteraction000303823
      WBInteraction000304622
      WBInteraction000315675
      WBInteraction000316183
      WBInteraction000321261
      WBInteraction000321513
      WBInteraction000323430
      WBInteraction000323448
      WBInteraction000323868
      WBInteraction000325004
      WBInteraction000331570
      WBInteraction000332686
      WBInteraction000334517
      WBInteraction000336088
      WBInteraction000336595
      WBInteraction000340086
      WBInteraction000345069
      WBInteraction000346590
      WBInteraction000351236
      WBInteraction000353971
      WBInteraction000355125
      WBInteraction000356699
      WBInteraction000363831
      WBInteraction000366773
      WBInteraction000373513
      WBInteraction000379305
      WBInteraction000385205
      WBInteraction000387159
      WBInteraction000391152
      WBInteraction000393356
      WBInteraction000394691
      WBInteraction000395776
      WBInteraction000398455
      WBInteraction000401482
      WBInteraction000401926
      WBInteraction000404016
      WBInteraction000413136
      WBInteraction000416768
      WBInteraction000424028
      WBInteraction000425715
      WBInteraction000432330
      WBInteraction000436789
      WBInteraction000441858
      WBInteraction000441867
      WBInteraction000443566
      WBInteraction000445357
      WBInteraction000448752
      WBInteraction000456845
      WBInteraction000500524
      WBInteraction000500525
      WBInteraction000500527
      WBInteraction000504384
      WBInteraction000504527
      WBInteraction000504970
      WBInteraction000504973
      WBInteraction000520119
      WBInteraction000521464
      WBInteraction000521465
      WBInteraction000521466
      WBInteraction000524803
      WBInteraction000538782
      WBInteraction000539608
      WBInteraction000539655
      WBInteraction000539699
      WBInteraction000539703
      WBInteraction000539706
      WBInteraction000539711
      WBInteraction000539726
      WBInteraction000539730
      WBInteraction000539734
      WBInteraction000539737
      WBInteraction000539740
      WBInteraction000546203
      WBInteraction000549765
      WBInteraction000552277
      WBInteraction000552503
      WBInteraction000553352
      WBInteraction000553529
      WBInteraction000553686
      WBInteraction000553968
      WBInteraction000554574
      WBInteraction000555330
      WBInteraction000555431
      WBInteraction000559977
      WBInteraction000560710
      WBInteraction000561762
      WBInteraction000564403
      WBInteraction000564651
      WBInteraction000565422
      WBInteraction000567309
      WBInteraction000567338
      WBInteraction000569212
      WBInteraction000569500
      WBInteraction000569501
      WBInteraction000569601
      WBInteraction000570587
      WBInteraction000573621
      WBInteraction000576364
      WBInteraction000577816
      WBInteraction000579279
      WBInteraction000580507
      WBInteraction000581976
      WBInteraction000581989
      WBInteraction000584669
      WBInteraction000585151
      WBInteraction000585933
  Map_info: Map: X Position: -10.358 Error: 0.005327
    Positive: Positive_clone: C04F6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (60)
  Remark: Map X
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene