WormBase Tree Display for Gene: WBGene00006771
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| WBGene00006771 | SMap | S_parent | Sequence | Y71G12B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | tln-1 | Person_evidence | WBPerson110 | |||||
| Sequence_name | Y71G12B.11 | ||||||||
| Molecular_name (21) | |||||||||
| Other_name | unc-35 | Person_evidence | WBPerson261 | ||||||
| Ce Talin | Paper_evidence | WBPaper00036199 | |||||||
| CELE_Y71G12B.11 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | tln-1 | ||||||||
| DB_info | Database | WormFlux | gene | WBGene00006771 | |||||
| NDB | locus_tag | CELE_Y71G12B.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00006771|UniProtKB=G5EGK1 | |||||||
| family | PTHR19981 | ||||||||
| NCBI | gene | 171736 | |||||||
| RefSeq | protein | NM_001262110.3 | |||||||
| NM_001313547.3 | |||||||||
| NM_001373653.2 | |||||||||
| NM_001313545.3 | |||||||||
| NM_001392973.1 | |||||||||
| NM_058485.8 | |||||||||
| NM_001381251.1 | |||||||||
| TREEFAM | TREEFAM_ID | TF314677 | |||||||
| TrEMBL | UniProtAcc | G4S9F5 | |||||||
| G5EGK1 | |||||||||
| Q95XN3 | |||||||||
| A0A0K3ATT6 | |||||||||
| A0A0K3AQU9 | |||||||||
| W6SBK6 | |||||||||
| A0A0K3AUD9 | |||||||||
| UniProt_GCRP | UniProtAcc | G5EGK1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:42 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 12 Aug 2011 14:19:05 | WBPerson2970 | Name_change | CGC_name | tln-1 | ||||
| Other_name | unc-35 | ||||||||
| 3 | 31 Jan 2013 09:04:22 | WBPerson2970 | Event | Acquires_merge | WBGene00022151 | ||||
| Acquires_merge | WBGene00022151 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tln | ||||||||
| Reference_allele | WBVar00143069 | ||||||||
| Allele (384) | |||||||||
| Possibly_affected_by | WBVar02158438 | ||||||||
| Legacy_information | e259 : loopy irregular forward movement poor backing; active; slightly thin. ES2. ME2. NA1. | ||||||||
| [C.elegansII] e259 : loopy irregular forward movement, poor backing; active; slightly thin. ES2. ME2. NA1. [Brenner 1974] | |||||||||
| Strain | WBStrain00027032 | ||||||||
| WBStrain00032143 | |||||||||
| WBStrain00005542 | |||||||||
| WBStrain00006169 | |||||||||
| WBStrain00047172 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (21) | |||||||||
| Ortholog (49) | |||||||||
| Paralog | WBGene00006836 | ||||||||
| Structured_description | Automated_description | Predicted to enable integrin binding activity. Involved in negative regulation of epidermal growth factor receptor signaling pathway; regulation of vulval development; and vulval cell fate specification. Located in basement membrane; contractile fiber; and lateral plasma membrane. Expressed in several structures, including Psub4; Z2; Z3; distal tip cell; and vulval cell. Is an ortholog of human TLN2 (talin 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y71G12B.11a | |||||||
| Y71G12B.11b | |||||||||
| Y71G12B.11c | |||||||||
| Y71G12B.11d | |||||||||
| Y71G12B.11e | |||||||||
| Y71G12B.11f | |||||||||
| Y71G12B.11g | |||||||||
| Corresponding_transcript | Y71G12B.11a.1 | ||||||||
| Y71G12B.11b.1 | |||||||||
| Y71G12B.11c.1 | |||||||||
| Y71G12B.11d.1 | |||||||||
| Y71G12B.11e.1 | |||||||||
| Y71G12B.11f.1 | |||||||||
| Y71G12B.11g.1 | |||||||||
| Other_sequence (80) | |||||||||
| Associated_feature (33) | |||||||||
| Experimental_info | RNAi_result (50) | ||||||||
| Expr_pattern | Expr1325 | ||||||||
| Expr11786 | |||||||||
| Expr13258 | |||||||||
| Expr1022326 | |||||||||
| Expr1039757 | |||||||||
| Expr1161614 | |||||||||
| Expr2017418 | |||||||||
| Expr2035557 | |||||||||
| Drives_construct | WBCnstr00042808 | ||||||||
| Microarray_results (50) | |||||||||
| Expression_cluster (203) | |||||||||
| Interaction (21) | |||||||||
| Map_info | Map | I | Position | -13.1715 | |||||
| Well_ordered | |||||||||
| Positive | Positive_clone | Y71G12B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | 2_point | 3 | |||||||
| 258 | |||||||||
| 7147 | |||||||||
| 7168 | |||||||||
| Multi_point | 2 | ||||||||
| 348 | |||||||||
| 350 | |||||||||
| 3659 | |||||||||
| 3660 | |||||||||
| 3932 | |||||||||
| 5723 | |||||||||
| Pos_neg_data | 526 | ||||||||
| 3764 | |||||||||
| 6288 | |||||||||
| Reference (24) | |||||||||
| Method | Gene |
