WormBase Tree Display for Gene: WBGene00006722
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| WBGene00006722 | Evidence | Person_evidence | WBPerson2549 | ||||||
|---|---|---|---|---|---|---|---|---|---|
| WBPerson6733 | |||||||||
| SMap | S_parent | Sequence | F46E10 | ||||||
| Identity | Version | 1 | |||||||
| Name | CGC_name | ubh-2 | |||||||
| Sequence_name | Y40G12A.2 | ||||||||
| Molecular_name | Y40G12A.2 | ||||||||
| Y40G12A.2.1 | |||||||||
| CE52436 | |||||||||
| Other_name | CELE_Y40G12A.2 | Accession_evidence | NDB | BX284605 | |||||
| Public_name | ubh-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ubh | ||||||||
| Allele (14) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP5120 | ||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00006721 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006723 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006724 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables deNEDDylase activity and deubiquitinase activity. Involved in protein deneddylation. Predicted to be located in cytoplasm. Expressed in intestinal cell and neurons. Human ortholog(s) of this gene implicated in Alzheimer's disease; Parkinson's disease; and hereditary spastic paraplegia (multiple). Is an ortholog of human UCHL1 (ubiquitin C-terminal hydrolase L1) and UCHL3 (ubiquitin C-terminal hydrolase L3). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:10652 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12513) | ||||
| DOID:0070455 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12513) | ||||||
| DOID:14330 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12513) | ||||||
| DOID:0112344 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:12513) | ||||||
| Molecular_info | Corresponding_CDS | Y40G12A.2 | |||||||
| Corresponding_CDS_history | Y40G12A.2:wp262 | ||||||||
| Corresponding_transcript | Y40G12A.2.1 | ||||||||
| Other_sequence (23) | |||||||||
| Associated_feature | WBsf233814 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00015094 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00098015 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076786 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00098010 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056335 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056334 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr15526 | ||||||||
| Expr1019739 | |||||||||
| Expr1159823 | |||||||||
| Expr2017719 | |||||||||
| Expr2035857 | |||||||||
| Drives_construct | WBCnstr00042222 | ||||||||
| Construct_product | WBCnstr00042222 | ||||||||
| Microarray_results (15) | |||||||||
| Expression_cluster (78) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | V | Position | -0.04818 | Error | 0.006448 | |||
| Positive | Positive_clone | Y40G12A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00010020 | ||||||||
| WBPaper00025802 | |||||||||
| WBPaper00030133 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060977 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
