WormBase Tree Display for Gene: WBGene00006608
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| WBGene00006608 | SMap | S_parent | Sequence | T05A12 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | tre-2 | |||||||
| Sequence_name | T05A12.2 | ||||||||
| Molecular_name | T05A12.2a | ||||||||
| T05A12.2a.1 | |||||||||
| CE44739 | |||||||||
| T05A12.2b | |||||||||
| CE04897 | |||||||||
| T05A12.2c | |||||||||
| CE49303 | |||||||||
| T05A12.2b.1 | |||||||||
| T05A12.2c.1 | |||||||||
| Other_name | tre2 | Accession_evidence | EMBL | AJ512334 | |||||
| CELE_T05A12.2 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | tre-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:41 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tre | ||||||||
| Allele (87) | |||||||||
| Strain | WBStrain00003258 | ||||||||
| WBStrain00031502 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00082426 | ||||||||
| 00082427 | |||||||||
| 00082428 | |||||||||
| 00082429 | |||||||||
| 00082430 | |||||||||
| 00082431 | |||||||||
| 00092792 | |||||||||
| 00114454 | |||||||||
| 00114455 | |||||||||
| 00114456 | |||||||||
| Contained_in_operon | CEOP4200 | ||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00006607 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006611 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006610 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006609 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | tre-2 encodes one of four C. elegans trehalases; tre-2 is expressed throughout development. | Paper_evidence | WBPaper00006140 | |||||
| WBPaper00017649 | |||||||||
| Curator_confirmed | WBPerson48 | ||||||||
| WBPerson1843 | |||||||||
| Date_last_updated | 20 Apr 2015 00:00:00 | ||||||||
| Automated_description | Predicted to enable alpha,alpha-trehalase activity. Predicted to be involved in trehalose catabolic process. Is an ortholog of human TREH (trehalase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | T05A12.2a | |||||||
| T05A12.2b | |||||||||
| T05A12.2c | |||||||||
| Corresponding_CDS_history | T05A12.2:wp213 | ||||||||
| Corresponding_transcript | T05A12.2a.1 | ||||||||
| T05A12.2b.1 | |||||||||
| T05A12.2c.1 | |||||||||
| Other_sequence (93) | |||||||||
| Associated_feature | WBsf667979 | ||||||||
| WBsf667980 | |||||||||
| WBsf996845 | |||||||||
| WBsf996846 | |||||||||
| WBsf1017629 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00018176 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00052437 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00035165 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram38 | ||||||||
| Expr6610 | |||||||||
| Expr1017561 | |||||||||
| Expr1032739 | |||||||||
| Expr1156058 | |||||||||
| Expr2017489 | |||||||||
| Expr2035628 | |||||||||
| Drives_construct | WBCnstr00003733 | ||||||||
| WBCnstr00034272 | |||||||||
| Construct_product | WBCnstr00034272 | ||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (121) | |||||||||
| Interaction (81) | |||||||||
| Map_info | Map | IV | Position | 3.24775 | Error | 0.000551 | |||
| Positive | Positive_clone | T05A12 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4450 | |||||||
| 4478 | |||||||||
| 4737 | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006140 | ||||||||
| WBPaper00017649 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00046159 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061072 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
